Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3846 125 7e-24 seq4480 118 1e-21 seq2212 118 1e-21 seq4498 82.4 8e-11 >seq3846 Length=171336 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 ||||| | ||||| | |||| |||||||||||||||||||| || || || || Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || || || || || | | |||| || ||||||||||| || || || ||||||||||| Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562 Query 138523 GTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582 ||||||| ||||| | || | ||||||| | ||| || || | || | ||| Sbjct 15563 TGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTT 15622 Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| ||||| || |||||||| ||||| Sbjct 15623 TTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || | ||||||||||| | | || || |||||||| |||||||| | Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || || || || |||| | || | |||||| || || ||||| Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | |||| |||| | ||| | ||||||| | ||| || Sbjct 16232 ATTCCCTCTTTGTC-TTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGAC 16290 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||||| ||||| || || || ||||| || ||||| Sbjct 16291 TTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | |||||| || || || ||||| || | Sbjct 15005 GACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCG 15064 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | |||| | ||| ||||| ||||| || ||||||||||| |||||| || | Sbjct 15065 AATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACA 15124 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | || ||| ||||| | || | ||||| || |||| ||||| Sbjct 15125 TTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTG 15184 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 15185 ACAAAGATCTGCAT 15198 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || | ||||| ||| | | | |||||||||||||| || |||||| Sbjct 15200 CCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAA 15259 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| || || || ||||| || | | | |||| | ||| ||||| || || Sbjct 15260 AGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGG 15319 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| |||||| ||| | | || | || || | | ||| || Sbjct 15320 ATTCCCTCCTTGTC-TTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGAC 15378 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| |||||||| ||||| Sbjct 15379 TTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| || | || | || | | | || || ||||| ||||||||||| Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || ||||||||||| || | | |||| | |||||| ||||| ||||| Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | || | | || | ||||| | | ||| || Sbjct 15776 ATTCCCTCTTTGTC-CTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAAC 15834 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| | ||||| |||||||| ||||| Sbjct 15835 CTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882 >seq4480 Length=409792 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | |||||| |||||||||||||| |||| | ||| Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | || ||||| ||||| ||||| || || |||||||| |||||| || | | || Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||| |||| || ||||||||| | || | || || || ||||| || ||||| | Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684 Query 138605 AAATCTGCAT 138614 | |||||||| Sbjct 402683 AGATCTGCAT 402674 >seq2212 Length=252600 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | |||||| |||||||||||||| |||| | ||| Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | || ||||| ||||| ||||| || || |||||||| |||||| || | | || Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||| |||| || ||||||||| | || | || || || ||||| || ||||| | Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468 Query 138605 AAATCTGCAT 138614 | |||||||| Sbjct 250469 AGATCTGCAT 250478 >seq4498 Length=49303 Score = 82.4 bits (90), Expect = 8e-11 Identities = 190/281 (68%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 153480 ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATC 153539 || ||||||| ||| ||| ||||||||||| |||||| | || | ||| || | Sbjct 41829 ATCGGATAGTAGTTGATATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACT 41888 Query 153540 GCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGA-TTCACGGC 153598 |||| ||||| | ||||| || ||| |||| || | ||| | | || || || Sbjct 41889 TCCTTGAGTTTTTTAAAATCGTATGTCTTTTC--CG--GGGTAACAAACATGTTAACAGC 41944 Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTC--GGCGTCGCTGTACTGCACGATCTCG 153656 ||| || || |||||||| || || ||||| ||| | | | || | || || Sbjct 41945 AATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTGAATATTCTATA--ATTTCA 42002 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | ||| || || |||||||| || ||||| || || ||||| |||||||||||| Sbjct 42003 GTGCAAAGATTACTGCATTTGATTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAG 42062 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 |||||| | |||||||| ||| ||| || || || || Sbjct 42063 TGATCTTTGTACAGCATGTATGGTGTGCCAGTTTCAACCTG 42103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496234342564560