Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 125 7e-24
seq4480 118 1e-21
seq2212 118 1e-21
seq4498 82.4 8e-11
>seq3846
Length=171336
Score = 125 bits (138), Expect = 7e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462
||||| | ||||| | |||| |||||||||||||||||||| || || || ||
Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502
Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522
|| || || || || | | |||| || ||||||||||| || || || |||||||||||
Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562
Query 138523 GTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582
||||||| ||||| | || | ||||||| | ||| || || | || | |||
Sbjct 15563 TGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTT 15622
Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| ||||| ||||| || |||||||| |||||
Sbjct 15623 TTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| || || | ||||||||||| | | || || |||||||| |||||||| |
Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||| || || || || |||| | || | |||||| || || |||||
Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || |||||||| ||| | |||| |||| | ||| | ||||||| | ||| ||
Sbjct 16232 ATTCCCTCTTTGTC-TTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGAC 16290
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | ||||| ||||| || || || ||||| || |||||
Sbjct 16291 TTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| |||||||||||||| | |||||| || || || ||||| || |
Sbjct 15005 GACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCG 15064
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| |||| | ||| ||||| ||||| || ||||||||||| |||||| || |
Sbjct 15065 AATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACA 15124
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | ||||| | || ||| ||||| | || | ||||| || |||| |||||
Sbjct 15125 TTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTG 15184
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 15185 ACAAAGATCTGCAT 15198
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | || | ||||| ||| | | | |||||||||||||| || ||||||
Sbjct 15200 CCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAA 15259
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||||| || || || ||||| || | | | |||| | ||| ||||| || ||
Sbjct 15260 AGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGG 15319
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| |||||| ||| | | || | || || | | ||| ||
Sbjct 15320 ATTCCCTCCTTGTC-TTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGAC 15378
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||| |||||||| |||||||| |||||
Sbjct 15379 TTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||||| || | || | || | | | || || ||||| |||||||||||
Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || || ||||||||||| || | | |||| | |||||| ||||| |||||
Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || |||||||| ||| |||| | || | | || | ||||| | | ||| ||
Sbjct 15776 ATTCCCTCTTTGTC-CTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAAC 15834
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || ||||| | ||||| |||||||| |||||
Sbjct 15835 CTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
>seq4480
Length=409792
Score = 118 bits (130), Expect = 1e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || ||||||||||| | |||||| |||||||||||||| |||| | |||
Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544
| || ||||| ||||| ||||| || || |||||||| |||||| || | | ||
Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744
Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604
| | ||| |||| || ||||||||| | || | || || || ||||| || ||||| |
Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684
Query 138605 AAATCTGCAT 138614
| ||||||||
Sbjct 402683 AGATCTGCAT 402674
>seq2212
Length=252600
Score = 118 bits (130), Expect = 1e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || ||||||||||| | |||||| |||||||||||||| |||| | |||
Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544
| || ||||| ||||| ||||| || || |||||||| |||||| || | | ||
Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408
Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604
| | ||| |||| || ||||||||| | || | || || || ||||| || ||||| |
Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468
Query 138605 AAATCTGCAT 138614
| ||||||||
Sbjct 250469 AGATCTGCAT 250478
>seq4498
Length=49303
Score = 82.4 bits (90), Expect = 8e-11
Identities = 190/281 (68%), Gaps = 9/281 (3%)
Strand=Plus/Plus
Query 153480 ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATC 153539
|| ||||||| ||| ||| ||||||||||| |||||| | || | ||| || |
Sbjct 41829 ATCGGATAGTAGTTGATATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACT 41888
Query 153540 GCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGA-TTCACGGC 153598
|||| ||||| | ||||| || ||| |||| || | ||| | | || || ||
Sbjct 41889 TCCTTGAGTTTTTTAAAATCGTATGTCTTTTC--CG--GGGTAACAAACATGTTAACAGC 41944
Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTC--GGCGTCGCTGTACTGCACGATCTCG 153656
||| || || |||||||| || || ||||| ||| | | | || | || ||
Sbjct 41945 AATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTGAATATTCTATA--ATTTCA 42002
Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716
| ||| || || |||||||| || ||||| || || ||||| ||||||||||||
Sbjct 42003 GTGCAAAGATTACTGCATTTGATTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAG 42062
Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757
|||||| | |||||||| ||| ||| || || || ||
Sbjct 42063 TGATCTTTGTACAGCATGTATGGTGTGCCAGTTTCAACCTG 42103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496234342564560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |