Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3846 123 2e-23 >seq3846 Length=171336 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | ||| || ||||| ||||| ||||| || || ||||| || || Sbjct 15884 CCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTC--TG 15941 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || ||||||| | || |||||||| | ||||||||||| ||||| | Sbjct 15942 ATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 16001 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| |||||||| |||||| |||||| |||| ||||| ||| || | Sbjct 16002 GAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAA 16061 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || |||||||| || || ||||| || || ||||||||||| Sbjct 16062 CTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || || | ||||||||| | ||| || |||||||| || ||||| || Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| | || ||||| ||| | ||||||||||| || || ||| Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| || ||||| ||| ||||| |||||| |||| ||||| ||| || || Sbjct 16232 ATTCCCTCTTTGTCTTGAATCTTTGC-CTTTACATTTTCAATAGTGTCGGAGGCCTCGAC 16290 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| || || || || || ||||| ||||||||| Sbjct 16291 TTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCATA 16339 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||||| ||||||||| || || ||||| || || || ||| ||| | | | | ||||| Sbjct 15217 AACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTC 15276 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | || || | ||| ||||| ||| ||||| |||||||| Sbjct 15277 CAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 15336 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| || | ||||| ||||| || || || || ||||| || || Sbjct 15337 AATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTT 15396 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| ||||||||||||||| Sbjct 15397 TCCAGTAAGAGTTTTGACAAAAATTTGCATA 15427 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| |||||||| | ||| | ||| || || ||||| |||||||| || | Sbjct 15428 CCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCA--G 15485 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || ||| | ||||| | || || ||||| | || | ||||||||||| || Sbjct 15486 ACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTG 15545 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| ||||| ||||| |||||| | || || || ||| || | Sbjct 15546 GAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGA 15605 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || |||||||||||||| || || ||||| || |||||||||||||| Sbjct 15606 CTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || |||||||| |||||||| || ||| | | | ||||| | |||| Sbjct 15680 TGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGT 15739 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||||||||| ||||| |||||||| || ||||| |||||| Sbjct 15740 TTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTA 15799 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || ||||| || | || || || || || || || || || || Sbjct 15800 GCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTT 15859 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||||| |||||||||||||| Sbjct 15860 AATGTTTTGACAAAAATTTGCAT 15882 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| ||||| || || || |||||||| || || | | | | ||||| Sbjct 14989 AACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTC 15048 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || ||| |||| || | ||| ||||| ||||||||||| ||||| Sbjct 15049 CAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 15108 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| |||| || || || || || || ||||| || ||||| Sbjct 15109 GATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| ||||| || |||||| Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCATA 15199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357372299101055