Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 141 8e-29
seq4498 96.9 3e-15
>seq3846
Length=171336
Score = 141 bits (156), Expect = 8e-29
Identities = 172/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || ||||| || || ||||| | |||||||||||||| || || || ||
Sbjct 15425 ATACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCA 15484
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| |||| ||| || | || ||||| || | || | ||| || ||||| ||
Sbjct 15485 GACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGT 15544
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||||||||| ||||| |||||| ||| | || | || | |||||||| | |||
Sbjct 15545 GGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTA-CGTTCTCAATTGTGTCGGAGGCCTC 15603
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||||| | |||| |||||||| || ||||| || |||||||||||||||
Sbjct 15604 GACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCATC 15655
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|||||||| || || || |||||||| |||||||| ||| | || ||| |||
Sbjct 15218 ACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCC 15277
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| |||||||| || | || |||| |||||||| || || || || || || ||||||
Sbjct 15278 AGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 15337
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|||||| ||| | || | |||| || || || | ||||||||| | ||||| || ||
Sbjct 15338 ATTTTTGCTTTCA-CGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTT 15396
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || |||||||| ||||||||||||||
Sbjct 15397 TCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| |||||||| || | | |||||||| || || |||||||||||||| |||||||||
Sbjct 16793 ATACCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCG 16852
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | ||||||||||| | ||||||| |||||||| ||
Sbjct 16853 GAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGT 16912
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || ||||| || ||||| || || | ||| | || || || | ||
Sbjct 16913 GGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCA 16972
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| || | || || || || | || || |||||||| |||||
Sbjct 16973 ACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCAT 17022
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||||||||| | | || ||||| || || |||||||| ||||| |||||||||
Sbjct 16565 ATACCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCG 16624
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| || | |||||||| || | || |||| |||||||| ||
Sbjct 16625 GAAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGT 16684
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || ||||| || || || ||| ||| | ||| | ||||| |||| |||
Sbjct 16685 GGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCA 16744
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | |||||||| |||| || || || || || |||||
Sbjct 16745 ACTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
Score = 102 bits (112), Expect = 7e-17
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
||| || ||||||| | || ||||| || || || ||||| || || || || ||
Sbjct 14971 TCCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 15030
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
| ||| ||| |||| ||||| |||||| |||| || | |||||||| || ||
Sbjct 15031 AAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGG 15090
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292
||| |||||||| ||||| ||||| |||| ||| | ||||| || | ||| ||
Sbjct 15091 AATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAAC 15150
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| | || | ||||||||||| | ||||| ||||| || ||||| ||| ||
Sbjct 15151 CTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCATACCGCCAC 15206
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || |||| | || || ||||| || ||||| |||||||| || || ||
Sbjct 15653 ATCCCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCC 15712
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| || | ||||||||| || | ||||| || |||||||| ||
Sbjct 15713 GAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGA 15772
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || ||||| || |||||||| || | || | ||||| |||| |||
Sbjct 15773 GGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCA 15832
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || | ||| | || || || |||| ||||| |||||||||||||||
Sbjct 15833 ACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCATC 15883
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| ||||| | | || ||||| || |||||||| || ||||| || |||||
Sbjct 16337 ATACCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCA 16396
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| || | ||||| || || | ||||| | |||||||| ||
Sbjct 16397 GAAAGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGT 16456
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || ||||||||||| || | ||| | ||||| |||| |||
Sbjct 16457 GGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCT 16516
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || |||| |||||||| |||| || || || || || |||||
Sbjct 16517 ACTTCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| || |||||||| || ||||| || || || ||||||||||| || | |
Sbjct 15980 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTT 16039
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | |||||||| | ||| ||||| | || | |||||||| || ||||| || ||
Sbjct 16040 TCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACG 16099
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 16100 AAAATTTGCAT 16110
>seq4498
Length=49303
Score = 96.9 bits (106), Expect = 3e-15
Identities = 165/234 (71%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGG--AGCGTTT 124158
||||||||||| ||||||||||||| ||||| ||| || | ||||||||| ||| | |
Sbjct 41419 ATTTTGCAGTATGACATGTGGAATGTCACACCAACAGATCTTTGGGACTGGGCAGC-TCT 41361
Query 124159 TAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGA 124218
||| | | | ||| | | ||||| | || || ||||| | | || |||||||
Sbjct 41360 GAAAGCTAAG-ATAGCTAAACACGGCGTACGGAATTCGCTACTCATAGCCCCAATGCCGA 41302
Query 124219 CGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAA-- 124276
| ||| |||| || |||||| | || ||||| ||||| |||| | | || | |||
Sbjct 41301 CTGCATCCACAGCACAAATTCTCGGGAACAATGAATCAATCGAAGCTTATACCAGCAACG 41242
Query 124277 TTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTT 124330
||| ||| || ||||| ||| | || || |||||| | | |||| |||||
Sbjct 41241 TTTATAC--ACGCCGAGTCTTATCTGGAGAATTTCAAATAGTCAATCCCCATTT 41190
Score = 96.9 bits (106), Expect = 3e-15
Identities = 119/160 (74%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659
|| || ||||| || || || |||||||| |||||||| |||||| | ||| | |||
Sbjct 42103 CAGGTTGAAACTGGCACACCATACATGCTGTACAAAGATCACTGCAATCGCAAATCAAAT 42044
Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719
|| ||| |||| ||||| ||||| |||||||||||| | |||||||| ||||| |
Sbjct 42043 CAACAGAACGTGGGCACAATCAAATGCAGTAATCTTTGCACTGAAATTATAGAATA-TTC 41985
Query 123720 GATGCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758
| || || |||| || || |||||| | || ||||||
Sbjct 41984 AAGCCCTGAAGAAGTTGCTGTTTGTAATCTAGCATCGATT 41945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451977644869080
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