Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3846 141 8e-29 seq4498 96.9 3e-15 >seq3846 Length=171336 Score = 141 bits (156), Expect = 8e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || ||||| || || ||||| | |||||||||||||| || || || || Sbjct 15425 ATACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCA 15484 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || ||||| || | || | ||| || ||||| || Sbjct 15485 GACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGT 15544 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||| ||||| |||||| ||| | || | || | |||||||| | ||| Sbjct 15545 GGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTA-CGTTCTCAATTGTGTCGGAGGCCTC 15603 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| | |||| |||||||| || ||||| || ||||||||||||||| Sbjct 15604 GACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCATC 15655 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||||||| || || || |||||||| |||||||| ||| | || ||| ||| Sbjct 15218 ACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCC 15277 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| || | || |||| |||||||| || || || || || || |||||| Sbjct 15278 AGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 15337 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | || | |||| || || || | ||||||||| | ||||| || || Sbjct 15338 ATTTTTGCTTTCA-CGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTT 15396 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||||||| |||||||||||||| Sbjct 15397 TCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | |||||||| || || |||||||||||||| ||||||||| Sbjct 16793 ATACCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCG 16852 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||||||||| | ||||||| |||||||| || Sbjct 16853 GAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGT 16912 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || ||||| || || | ||| | || || || | || Sbjct 16913 GGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCA 16972 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || || || || | || || |||||||| ||||| Sbjct 16973 ACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCAT 17022 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | || ||||| || || |||||||| ||||| ||||||||| Sbjct 16565 ATACCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCG 16624 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | |||||||| || | || |||| |||||||| || Sbjct 16625 GAAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGT 16684 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || || || ||| ||| | ||| | ||||| |||| ||| Sbjct 16685 GGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCA 16744 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||||| |||| || || || || || ||||| Sbjct 16745 ACTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||||| | || ||||| || || || ||||| || || || || || Sbjct 14971 TCCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 15030 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| |||| ||||| |||||| |||| || | |||||||| || || Sbjct 15031 AAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGG 15090 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||| |||||||| ||||| ||||| |||| ||| | ||||| || | ||| || Sbjct 15091 AATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAAC 15150 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || | || | ||||||||||| | ||||| ||||| || ||||| ||| || Sbjct 15151 CTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCATACCGCCAC 15206 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || |||| | || || ||||| || ||||| |||||||| || || || Sbjct 15653 ATCCCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCC 15712 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||||||||| || | ||||| || |||||||| || Sbjct 15713 GAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGA 15772 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || |||||||| || | || | ||||| |||| ||| Sbjct 15773 GGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCA 15832 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | ||| | || || || |||| ||||| ||||||||||||||| Sbjct 15833 ACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCATC 15883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || ||||| || |||||||| || ||||| || ||||| Sbjct 16337 ATACCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCA 16396 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||||| || || | ||||| | |||||||| || Sbjct 16397 GAAAGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGT 16456 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||||||||| || | ||| | ||||| |||| ||| Sbjct 16457 GGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCT 16516 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| |||||||| |||| || || || || || ||||| Sbjct 16517 ACTTCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| || |||||||| || ||||| || || || ||||||||||| || | | Sbjct 15980 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTT 16039 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||||| | ||| ||||| | || | |||||||| || ||||| || || Sbjct 16040 TCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACG 16099 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 16100 AAAATTTGCAT 16110 >seq4498 Length=49303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGG--AGCGTTT 124158 ||||||||||| ||||||||||||| ||||| ||| || | ||||||||| ||| | | Sbjct 41419 ATTTTGCAGTATGACATGTGGAATGTCACACCAACAGATCTTTGGGACTGGGCAGC-TCT 41361 Query 124159 TAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGA 124218 ||| | | | ||| | | ||||| | || || ||||| | | || ||||||| Sbjct 41360 GAAAGCTAAG-ATAGCTAAACACGGCGTACGGAATTCGCTACTCATAGCCCCAATGCCGA 41302 Query 124219 CGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAA-- 124276 | ||| |||| || |||||| | || ||||| ||||| |||| | | || | ||| Sbjct 41301 CTGCATCCACAGCACAAATTCTCGGGAACAATGAATCAATCGAAGCTTATACCAGCAACG 41242 Query 124277 TTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTT 124330 ||| ||| || ||||| ||| | || || |||||| | | |||| ||||| Sbjct 41241 TTTATAC--ACGCCGAGTCTTATCTGGAGAATTTCAAATAGTCAATCCCCATTT 41190 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 || || ||||| || || || |||||||| |||||||| |||||| | ||| | ||| Sbjct 42103 CAGGTTGAAACTGGCACACCATACATGCTGTACAAAGATCACTGCAATCGCAAATCAAAT 42044 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || ||| |||| ||||| ||||| |||||||||||| | |||||||| ||||| | Sbjct 42043 CAACAGAACGTGGGCACAATCAAATGCAGTAATCTTTGCACTGAAATTATAGAATA-TTC 41985 Query 123720 GATGCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 | || || |||| || || |||||| | || |||||| Sbjct 41984 AAGCCCTGAAGAAGTTGCTGTTTGTAATCTAGCATCGATT 41945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451977644869080