Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3846 138 3e-27 seq4480 95.1 3e-14 seq2212 95.1 3e-14 >seq3846 Length=171336 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || || || ||||||| ||||||||| | | ||| | |||||| Sbjct 15671 AGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCT 15730 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||| || ||||| | |||||||||||| ||| |||||| ||| ||| Sbjct 15731 TCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCC 15790 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || |||||| || | ||||| | | || || ||||| ||||| ||| Sbjct 15791 TGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTC 15850 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| ||||||||||| Sbjct 15851 TTTCCAGTTAATGTTTTGACAAAAATTTG 15879 Score = 132 bits (146), Expect = 1e-25 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | ||||||||||| ||| || | ||||||||| ||||||||||| Sbjct 15458 GTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCTTCAAGCTGCTTTCCA 15517 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || |||||||| ||||| ||||| || ||| |||||| || || || |||||| || Sbjct 15518 GCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGAT-TTTTGCTTT 15576 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| || | ||||| | | || || ||||| || || || || || || ||||| Sbjct 15577 TACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGT 15636 Query 199612 TTTCACAAAAATTTG 199626 |||||||||||||| Sbjct 15637 CTTCACAAAAATTTG 15651 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || | ||| ||||| || || || |||| |||||||| | || ||| Sbjct 15890 CGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTC 15949 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||| |||||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 15950 CGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCC 16009 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| || ||| | ||||| | | || || |||||| Sbjct 16010 TCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAAC 16069 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || |||||||| Sbjct 16070 GTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTG 16107 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||| | |||||||| | |||||| | ||| ||||| |||||||| ||| Sbjct 16142 GTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCG 16201 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | ||||||||| || ||| |||||| ||| || ||||||||| ||| Sbjct 16202 GCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTT 16261 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | ||||| | | || || ||||||||||| || || || || || || Sbjct 16262 ACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTC 16321 Query 199613 TTCACAAAAATTTG 199626 || ||||| ||||| Sbjct 16322 TTGACAAAGATTTG 16335 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||| || || |||||||||| ||| || || | | || Sbjct 16802 CGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAAAGGGTG 16861 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| ||||| || ||||| | | ||||||||| || |||||| Sbjct 16862 CGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCC 16921 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| |||||| ||||| || || | || ||| || || | Sbjct 16922 TCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAACTTCGAGG 16981 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || || |||||||| || Sbjct 16982 GTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTG 17019 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || || || || || ||||||||||| | || ||||| | | ||| Sbjct 15206 CGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTA 15265 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||| ||||| || || || | | ||||||||| || ||||| Sbjct 15266 CGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCC 15325 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || ||||| |||||| |||||| || | || || | || || || ||||| Sbjct 15326 TCCTTGTCTTGAAT-TTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAA 15384 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || |||||||| ||||||||||| Sbjct 15385 AGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTG 15423 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| |||||||| || | ||||||||| | | || | |||||| Sbjct 14987 AGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCT 15046 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || ||||| || | | ||||||||| ||| |||||||||| || Sbjct 15047 TCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCT 15106 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| || ||| | ||||| | | || || ||||| ||||| || Sbjct 15107 TGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTT 15166 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| ||||| || || Sbjct 15167 TTGCCGGTCAAGGTTTTGACAAAGATCTG 15195 >seq4480 Length=409792 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | ||| | ||||| || || || || ||||| |||| Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 |||| ||||||||||| ||| ||||| ||| ||||| || || ||| || || Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||| || | | || || || | ||||| ||||| ||||| || || || || | Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684 Query 199620 AAATTTG 199626 | || || Sbjct 402683 AGATCTG 402677 >seq2212 Length=252600 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | ||| | ||||| || || || || ||||| |||| Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 |||| ||||||||||| ||| ||||| ||| ||||| || || ||| || || Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||| || | | || || || | ||||| ||||| ||||| || || || || | Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468 Query 199620 AAATTTG 199626 | || || Sbjct 250469 AGATCTG 250475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178853280388041