Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3846 120 3e-22 seq4480 107 2e-18 seq2212 107 2e-18 >seq3846 Length=171336 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||| ||||||||||| || | ||| || |||| || ||||||||||||||||| Sbjct 16148 TCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAA 16207 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | | ||| ||||| ||||| ||| | | Sbjct 16208 ATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTT 16267 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || |||| ||||||||||||||| || || || || ||| Sbjct 16268 TCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACA 16327 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 16328 AAGATTTGCAT 16338 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || |||||||||||||| |||| || || |||| || ||||||||||| || || Sbjct 15920 TCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAG 15979 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | ||||||||| || ||| ||| | | Sbjct 15980 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTT 16039 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || |||| ||||||||||||||| || || || ||||| Sbjct 16040 TCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACG 16099 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 16100 AAAATTTGCATT 16111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||||||| | ||| ||||| ||||| || || ||||| Sbjct 16568 CCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAA 16627 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || |||||||| || ||||| || || || | ||||||||| | || Sbjct 16628 AGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGG 16687 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| |||||| |||||| || | | | | |||||| | || || Sbjct 16688 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACT 16747 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| || | || || || ||||| ||||| Sbjct 16748 TCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| || || ||||| || ||||| | || |||||||| || || || || Sbjct 16832 TCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAG 16891 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | ||| |||||| ||||| ||| | | Sbjct 16892 ATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTT 16951 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || | ||| || || | |||||||| || ||||||| || || ||| Sbjct 16952 TCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACA 17011 Query 46583 AAGATTTGCATTTT 46596 || || ||||| || Sbjct 17012 AAAATCTGCATGTT 17025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| || |||||||| | || ||||| || || || || || Sbjct 15692 TCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAG 15751 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | ||| |||||| || || ||| | || Sbjct 15752 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTC 15811 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || |||| ||||| || || || || | ||||| ||| Sbjct 15812 TCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACA 15871 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 15872 AAAATTTGCAT 15882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 46382 AACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441 || |||||||| || || |||||||| || |||||||| || | || || | || Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502 Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || |||||||| || || || || | ||||| ||||| | || | || || ||||| Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562 Query 46502 ATGATCTTCTTCTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 ||| || | ||| ||| | | | |||||| | || || |||| || ||||| Sbjct 15563 TGGATTTT-TGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGT 15621 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || || ||||| |||||||| Sbjct 15622 TTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 >seq4480 Length=409792 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || ||||| || | || ||||| || |||||||| || | Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||||||| | || | | ||| |||||| ||| || ||||| | Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || ||| || ||||| || | |||||||| ||||||||||| || || || | Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684 Query 46584 AGATTTGCATTTTG 46597 |||| |||||| || Sbjct 402683 AGATCTGCATTGTG 402670 >seq2212 Length=252600 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || ||||| || | || ||||| || |||||||| || | Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||||||| | || | | ||| |||||| ||| || ||||| | Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || ||| || ||||| || | |||||||| ||||||||||| || || || | Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468 Query 46584 AGATTTGCATTTTG 46597 |||| |||||| || Sbjct 250469 AGATCTGCATTGTG 250482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565206442833960