Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3919 143 3e-29 seq3846 132 5e-26 seq4480 120 3e-22 seq2212 120 3e-22 >seq3919 Length=163912 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||| ||||| ||| ||||| || || || || || |||||||| |||||||| Sbjct 143229 GTAAGTGTCTATGAGCAGCGAGTACATCTCTGAATGAACATTTTCCATGGCTATTTGAAA 143288 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||||||||||| || || || ||||||||| |||||||||||| ||||| Sbjct 143289 GCCGTAAAAGCACCTGGCTTCTGTTACAGTCACTTCTTGGCTGAAACGCTCGACTAGATT 143348 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||| || || || |||||||| ||||| || || |||||||| || Sbjct 143349 TTCGTTGACGATTCCATCCGATGCCGCGAAAAATGCCAGGACATGAGATATGAAATGACG 143408 Query 133347 CTCGTTGTCGTT 133358 ||| |||| || Sbjct 143409 CTCACTGTCCTT 143420 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||||||||||| ||||||||||| |||| || ||||| | || || |||| Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| ||||||| ||||||||| || ||||||| || ||||| || || || | Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | ||||| ||||| | || | | || |||||| ||||||||| | | Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 |||| | ||| || || | |||| ||||| || |||| Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACA 142434 >seq3846 Length=171336 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||||||||| ||| | || ||||||||| || Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| |||||||| |||||||| || ||||| | ||||| Sbjct 15594 GACACAATTGAGAACG-TAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCA 15536 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || || || ||||| || || | || ||| | |||||||| Sbjct 15535 ACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAA 15476 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||| ||||||||| | || | ||| |||| Sbjct 15475 CATTCAAAAGGAATCAACCTTACATCTGGT 15446 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || |||||||||||||| | || ||||||||| || Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| || | ||||||||||||||||| | || || Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || |||| || || | |||||||| Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || | ||||| || || || ||||||| || Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGG 16112 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| |||||||||||||| | || || |||||| | Sbjct 16111 AATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTC 16052 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | ||| | || | ||||| | ||||| ||||||||||| | ||||| Sbjct 16051 CGACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCA 15992 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||||| || |||| || ||| | |||||||| Sbjct 15991 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAA 15932 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || || || ||||| || || Sbjct 15931 TATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCG 15896 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || |||||||| |||||| | || || ||||| | Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||||||| |||||||| |||||||| | ||||| Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || ||||||||||| || | ||| ||||| ||||||||| Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || ||| |||| || || Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCG 14984 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||||||||||||| | || || ||||| | Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||| |||| |||||||||||||| || | ||||| Sbjct 16734 GACACGATTGAAAATG-TGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCA 16676 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || |||||||| || || | ||||| || ||| || || Sbjct 16675 GCAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAA 16616 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || ||| |||| || ||| Sbjct 16615 CATCCAGAAGGAATCTACTCTTCATCTGGTCCTTCGT 16579 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || | ||||| || ||||||||| |||| || || || Sbjct 17026 AAACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGC 16967 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | ||| | || | || || | ||||||||||||||||| | || Sbjct 16966 ATCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGA 16907 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| | | || | || || |||||||| || || | |||||||| ||| || Sbjct 16906 CCAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTA 16847 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||||| | || || ||| | || || ||| Sbjct 16846 TAACATCCAAAAGGAATCCACCCTCCATCTAGTCCTTCGT 16807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || || || || || | || |||||||| | Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | |||| |||||| | ||||| |||||||| || | ||||| Sbjct 15366 GATACAATAGAGAACG-TGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCA 15308 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| || || ||||||||||| || | ||| || || |||||| || Sbjct 15307 GCAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAA 15248 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||| | || || ||| | || || || Sbjct 15247 TATTCAAAAGGAGTCCACCCTTCATCTAGTTCTCCG 15212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || || ||||| | || || ||||| | Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||| | ||||||||||||||||| | ||||| Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || ||||| || || || | ||||| || ||||||||| Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || ||||| | || || || || |||| || Sbjct 15702 ATCCAAAAAGAATCCACCCTGCACCTTGTCCTTCGGCTGCGAGGAGG 15656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || |||||||| || ||| | || || ||||| | Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||||| | ||||| |||||||| || | ||||| Sbjct 16506 GACACAATTGAAAACG-TGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCA 16448 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||||||||| || || | || || || || ||||| Sbjct 16447 GCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAA 16388 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || ||| | || || ||| Sbjct 16387 CATCCAGAAAGAATCAACTCTTCATCTTGTCCTTCGT 16351 >seq4480 Length=409792 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || |||||||| || || |||||||| |||||||| | || || ||||| | Sbjct 402673 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 402732 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||| | || | ||||||| |||||||||||||| || | ||||| Sbjct 402733 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 402792 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || |||||||| || || || | || || || |||||||| Sbjct 402793 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 402852 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 402853 CATCCAGAAGG 402863 >seq2212 Length=252600 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || |||||||| || || |||||||| |||||||| | || || ||||| | Sbjct 250479 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 250420 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||| | || | ||||||| |||||||||||||| || | ||||| Sbjct 250419 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 250360 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || |||||||| || || || | || || || |||||||| Sbjct 250359 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 250300 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 250299 CATCCAGAAGG 250289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500144521480320