Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq47 190 8e-43 seq3846 120 1e-21 seq2824 105 3e-17 seq4011 100 1e-15 seq1846 87.8 7e-12 seq713 84.2 9e-11 >seq47 Length=398807 Score = 190 bits (210), Expect = 8e-43 Identities = 833/1298 (64%), Gaps = 39/1298 (3%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||| ||| | || |||| | || ||||| || || || ||||| || |||||| Sbjct 139560 GGAAAACCCAAAATCGAAGTTCAATACAAAGGAGAGACGAAGACTTTCTTCCCAGAAGAA 139501 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 | || ||||| || ||| ||||| ||||| || || ||| ||||| | Sbjct 139500 GTGAGCTCAATGGTCCTGGTTAAGATGAAGGAAACTGCCGAGGCATACCTTGGTAAAACC 139441 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || |||| || || ||||||||||| |||||||| || | || || || ||||| Sbjct 139440 GTCACCAATGCCGTGATCACTGTTCCCGCCTATTTCAACGACTCGCAGCGTCAGGCAACC 139381 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 ||||| | || || | ||| | || || || |||||||| ||||| || |||||| Sbjct 139380 AAAGACTCTGGTACCATCTCAGGTCTGAACGTACTGCGAATTATCAATGAGCCCACAGCA 139321 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||||| | || |||||||| | || |||| | |||| ||| || | | Sbjct 139320 GCTGCCATTGCTTATGGACTTGACAA---GAAAGCTGTTGGAGAACGTAATGTTCTCATT 139264 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 ||||| |||| || || ||| |||| || | ||| | || || ||||| | || Sbjct 139263 TTTGACCTTGGCGGCGGTACTTTTGATGTATCCATCCTTACCATCGAGGATGGAATCTTC 139204 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 || || ||| | || |||||| ||||| || || || |||||| |||| ||| || Sbjct 139203 GAGGTCAAGTCGACTGCTGGTGACACTCACCTTGGTGGAGAAGATTTTGACAATCGCATG 139144 Query 451613 GTGGA----ATGGTTGAAAACTGATGTTCAA-CGAAAACTAAAAG-TAGATATTTCTACT 451666 ||| | | || || | |||||| |||||| || ||| |||| | | Sbjct 139143 GTGAACCACTTTGTCCAAGA-----GTTCAAGCGAAAA-TACAAGAAAGATCTGACCCAG 139090 Query 451667 AACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGT 451726 ||| || || || | || ||| ||| | |||| ||| || ||||| Sbjct 139089 AACAAACGTGCTCTACGTCGACTTCGCACAGCGTGTGAAAGAGCGAAGCGCACACTATCC 139030 Query 451727 TCAACACAAACTA-CTAGTATAAACATTGATAGTTTAGTTGATGGAATGGA-TTATGCTA 451784 ||| | || | | | || || | |||||| | | |||| ||||| || || | | | Sbjct 139029 TCATC-CACCCAAGCCAGCATTGAGATTGATTCTCTCTTTGAGGGAATTGACTTCTAC-A 138972 Query 451785 CTACTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGTA--AT 451842 || | | || | ||| ||||||| |||| | ||| | | | | |||| | Sbjct 138971 CTTCCATCACAAGAGCTCGATTTGAA-GAATTGTGTGCAG-ACCTCTTCCGTGGTACTCT 138914 Query 451843 GAAACCTGTTGATCAAGT-ATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAA 451901 ||||||| || |||| | | |||| ||||||| || | | ||| | || | Sbjct 138913 TGAACCTGTGGA-GAAGTCCCTTCGTGATGCTAAAATGGACAAGTCTCAGATTCACGACA 138855 Query 451902 TTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCT 451957 |||| || || || || || || || || ||||| ||||| | | || | ||||| Sbjct 138854 TTGTTCTGGTTGGTGGCTCCACTCGTATCCCTAAGATTCAGAAGCTCTTGCAGGACTTCT 138795 Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017 | | || || |||| ||| | || |||||||||||||| || || || Sbjct 138794 TCAAT----GGCAAGGAACTGAATAAATCTATCAACCCTGATGAAGCTGTAGCTTACGGA 138739 Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATT 452074 || || || ||||| || ||||| || | |||| | || || | || || Sbjct 138738 GCGGCTGTCCAAGCTGCCATTCT-CCA--TGGAGATAAGTCAGAGGAAGTGCAGGACCTT 138682 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 || | ||||||| || || || |||||||| | ||||| ||||| || | |||||| Sbjct 138681 CTTCTCTTAGATGTTACTCCCCTTTCTCTTGGTATCGAAACTGCTGGCGGTGTCATGACT 138622 Query 452135 AATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCA 452194 | || || || || | ||||| ||| ||| ||||| || | ||| Sbjct 138621 GCACTTATCAAGCGTAACACAACCATTCCAACTAAGCAGACACAAACGTTCACTACCTAT 138562 Query 452195 AGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGA 452254 ||||| || || |||||| || ||||| | ||||| || || |||||||| Sbjct 138561 GCCGATAATCAGCCTGGTGTACTCATCCAAGTCTACGAAGGTGAGCGAGCAATGACTAAG 138502 Query 452255 GATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACT 452314 || |||||| ||| ||| | ||| || ||||| || || | || | Sbjct 138501 GACAATAATCTACTTGGAAAGTTTGAGCTCAGCGGGATTCCACCGGCACCCCGAGGCGTT 138442 Query 452315 CCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTT 452374 |||||||||||| | || | ||| | || || |||||||| || ||||| ||| ||| Sbjct 138441 CCTCAAATTGAAGTAACTTTTGACATCGACGCTAATGGTATCCTGAATGTATCTGCTGTT 138382 Query 452375 GAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCT 452434 || ||||| |||| ||| | | || || || ||||||||||| ||| || || Sbjct 138381 GACAAATCGACTGGTAAAGAAAATAAGATCACTATTACTAATGACAAAGGACGCTTGAGC 138322 Query 452435 AAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAA 452472 |||||||| ||||||| |||||| | || |||||||| Sbjct 138321 AAAGAAGACATTGAAAGAATGGTCAACGAGGCAGAAAA 138284 Score = 96.9 bits (106), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| || |||||||| ||||||| || |||||||| |||| |||| ||||||| Sbjct 140123 GCAGTTGGTATCGATCTTGGCACCACCTACTCCTGTGTAGGAGTTTTCCAACATGGAAAG 140064 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014 || ||||| || || |||||||||||| |||||||| || Sbjct 140063 GTGGAAATCATCGCCAATGACCAAGGAAATCGAACTACACC 140023 >seq3846 Length=171336 Score = 120 bits (132), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| ||||| || || | || || || | || Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||| |||||||| || || ||||||||||| ||||| Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || || |||||||| ||| | |||||| |||| || ||| Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || | || ||||| | |||||||||| Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGG 16115 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || ||||| || || |||||| | || || || ||||| Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | ||| |||||||||||| ||||| ||||| || || || || Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | |||||||| | || ||||| || |||||||| | ||| | | || |||||| Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || ||||| |||| Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGT 15218 Score = 113 bits (124), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || || | || ||||| | || Sbjct 16111 AATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTC 16052 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || ||||||||||| ||||| ||||||||||| || || Sbjct 16051 CGACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCA 15992 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| || || | || || || |||||||| ||| | || || | || || || Sbjct 15991 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAA 15932 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | || |||||||| || Sbjct 15931 TATCCAGAAAGAATCTACTCTTCACTTGGT 15902 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| |||| || |||||||| || | || ||||| | ||| Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||||| ||||| || |||||||||||||| || || Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | ||||| ||| |||||||||| || |||||||| | || | | || || || Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCA 14996 Score = 100 bits (110), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || ||||| ||||| ||||| | || || || | || Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | ||| |||||| ||||| || ||||| ||||| || || ||| Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || || |||||||||||| |||| ||| | || || || Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| |||| | || | || ||||| ||| | ||| Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGA 15430 Score = 91.5 bits (100), Expect = 6e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| | ||||| || || || ||| | || ||||| | || Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || |||||||| || || || ||||||||||| || || Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || |||||||| |||||||| | ||| | |||| || || Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | || || | || || ||| | || | | ||| ||||| Sbjct 15702 ATCCAAAAAGAATCCACCCTGCACCTTGTCCTTCGGCTGCGAGGA 15658 >seq2824 Length=230198 Score = 105 bits (116), Expect = 3e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || |||| || ||||||||| || | | | ||||||| | || ||| | || Sbjct 23547 AAGATGAGGGAGACAGCAGAAGCTTACCTGAGCACGCCAGTTAAGAACGCTGTAGTCACG 23488 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| || || ||||||||| | || ||||||||||||| ||||| || || ||||| Sbjct 23487 GTTCCGGCCTACTTCAATGATTCTCAGAGGCAAGCAACTAAGGATGCTGGGCAAATTGCC 23428 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || | || ||||| || |||| || ||||| ||||| |||||| |||| ||||| Sbjct 23427 GGCCTTAACGTTCTCAGAGTTATCAACGAACCAACAGCTGCTGCTTTAGCTTATGG 23372 >seq4011 Length=132779 Score = 100 bits (110), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || |||||||| || || |||||||| || || ||||| || || || || || | Sbjct 47249 CCCGAAGAAATATCCTCGATGGTTCTCACGAAGATGAAGGAGACCGCCGAGGCCTACCTG 47308 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || || |||| |||| || || || || || ||||| ||||| ||| | ||||| Sbjct 47309 GGCAAGACAATTACAAATGCGGTGATCACGGTGCCMGCTTACTTCAACGATTCTCAACGT 47368 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || || ||| | || ||| |||| | ||||| || | |||||||||||| Sbjct 47369 CAAGCGACGAAGGATTCCGGTGCCATTTCTGGGCTGAATGTCCTCAGGATTATTAATGAA 47428 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || ||||| || |||| || || || Sbjct 47429 CCGACCGCAGCGGCGATAGCTTACGGGCT 47457 >seq1846 Length=281985 Score = 87.8 bits (96), Expect = 7e-12 Identities = 166/242 (69%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || ||||| |||||||| ||| |||| ||||| | |||||| | |||| || ||||| Sbjct 58598 CAGGCAACCAAAGATGCTGGAACTATTTCTGGTCTGAATGTTATGAGAATCATAAATGAG 58657 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaa 451482 || || || ||||| | || || || || | | ||||| | | ||| || || Sbjct 58658 CCAACGGCTGCTGCAATTGCTTACGGTCTTG-------ACAAGAAGGATGGAGAGAAGAA 58710 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA--ATTGAA 451540 | | |||||||| ||| | ||||| || ||| ||| | || || || | ||||| Sbjct 58711 TGTCTTAGTATTCGATCTGGGTGGTGGTACTTTTGA--CGTCAGTCTCTTGACTATTGAC 58768 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 | || || || ||||| | | || || ||||| || ||| | ||||||||||| || Sbjct 58769 AACGGTGTGTTCGAAGTTGTGTCTACAAACGGTGACACCCATTTGGGAGGTGAAGACTTT 58828 Query 451601 GA 451602 || Sbjct 58829 GA 58830 >seq713 Length=327371 Score = 84.2 bits (92), Expect = 9e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 391151 AGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG 391210 ||| ||||| |||||||| || ||||| ||||| | || || |||||||| |||||||| Sbjct 311240 AGGGATTCCCCCTGATCAGCAGCGTTTGATTTTTGCTGGCAAGCAACTTGAGGATGGAAG 311299 Query 391211 AACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTA 391259 |||| | | ||||| ||||| | || || | || |||||||| ||| Sbjct 311300 AACTCTTTCCGATTACAATATCCAGAAAGAATCTACGCTTCACTTGGTA 311348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975603905266484