Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq47 383 1e-100 seq1768 275 5e-68 seq1846 123 2e-22 seq2824 100 2e-15 >seq47 Length=398807 Score = 383 bits (424), Expect = 1e-100 Identities = 887/1319 (67%), Gaps = 16/1319 (1%) Strand=Plus/Plus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 |||||||||||| || || || ||| || ||||| ||| | |||| ||||| || Sbjct 138340 ATTAGTAATAGTGATCTTATTTTCTTTACCAGTCGATTTGTCAACAGCAGATACATTCAG 138399 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||||| || || | ||||| || |||||||||||||| || |||| | || || Sbjct 138400 GATACCATTAGCGTCGATGTCAAAAGTTACTTCAATTTGAGGAACGCCTCGGGGTGCCGG 138459 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||| ||||| | | ||| |||| || |||||| || ||||| | | ||| || Sbjct 138460 TGGAATCCCGCTGAGCTCAAACTTTCCAAGTAGATTATTGTCCTTAGTCATTGCTCGCTC 138519 Query 517393 ACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 ||| ||| | | |||||| ||| || ||| |||||||| | ||| || || || | Sbjct 138520 ACCTTCGTAGACTTGGATGAGT-ACACCAGGCTGATTATCGGCATAGGTAGTGAACGTTT 138578 Query 517452 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | | ||| ||||| |||||||| | | |||| ||||| | ||| || | Sbjct 138579 GTGTCTGCTTAGTTGGAATGGTTGTGTTACGCTTGATAAGTGCAGTCATGACACCGCCAG 138638 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | ||||| | |||||||||||| ||||| ||||| | || | || | || | || | Sbjct 138639 CAGTTTCGATACCAAGAGAAAGGGGAGTAACATCTAAGAGAAGAAGGTCCTGCACTTCCT 138698 Query 517572 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | | || | ||| ||||| || ||||| | ||| || || || || ||||||||| Sbjct 138699 C-TGACTTATCTCCATGGAGAATGGCAGCTTGGACAGCCGCTCCGTAAGCTACAGCTTCA 138757 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 517689 ||||| || | || || ||| |||| || |||||||| || | || |||| || | Sbjct 138758 TCAGGGTTGATAGATTTATTCAGTTCCTTGCCATTGAAGAAGTCCTGCAAGAGCTTCT-G 138816 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | |||||| ||||||| || || ||||| | ||||| || || | ||| || || || Sbjct 138817 AATCTTAGGGATACGAGTGGAGCCACCAACCAGAACAATGTCGTGAATCTGAGACTTGTC 138876 Query 517750 CAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTG 517808 || ||| | ||| | | || || || || ||||||||| | | || | ||||| Sbjct 138877 CATTTTAGCATCACGAAGGGAC-TTCTCCACAGGTTCAAGAGTACCACGGAAGAGGTCTG 138935 Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 517866 ||| | |||||| ||| |||||| || || || | || || |||||||| || || Sbjct 138936 CACACAATTCTTCAAATCGAGCTCTTGT--GATGGAAGTGTAGAAGTCAATTCCCTCAAA 138993 Query 517867 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926 | |||||||| ||||| | | ||| || || || ||||||| || || || | ||| Sbjct 138994 GAGAGAATCAATCTCAATGCTGGCTTGGGTGGATGAGGATAGTGTGCGCTTCGCTCTTTC 139053 Query 517927 ACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTTATAT 517984 ||| ||||| | |||| |||| || | |||| | || ||| |||| | || ||| Sbjct 139054 ACACGCTGTGCGAAGTCGACGTAGAGCACGTTTGTT--CTGGGTCAGATCTTTCTTGTAT 139111 Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 |||| |||||| |||| ||| | | || | ||||| ||||||||||| || || Sbjct 139112 TTTCGCTTGAACTCTTGGACAAAGTGGTTCACCATGCGATTGTCAAAATCTTCTCCACCA 139171 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | ||| | || | || | | || | ||| | |||||| || | | | | Sbjct 139172 AGGTGAGTGTCACCAGCAGTCGACTTGACCTCGAAGATTCCATCCTCGATGGTAAGGATG 139231 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 518164 | ||||||| || || || || | |||||||| || ||||| |||| | Sbjct 139232 GATACATCAAAAGTACCGCCGCCAAGGTCAAAAATGAGAACATTACGTTCTCCAACAGCT 139291 Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||| ||||| |||| ||||| || || || ||||| ||||||| || || Sbjct 139292 TTCTTGTCAAGTCCATAAGCAATGGCAGCTGCTGTGGGCTCATTGATAATTCGCAGTACG 139351 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| | || | || | ||||| || || || | || || ||||| ||||| Sbjct 139352 TTCAGACCTGAGATGGTACCAGAGTCTTTGGTTGCCTGACGCTGCGAGTCGTTGAAATAG 139411 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || |||||||| || ||||||| || || |||||||| || || || |||| Sbjct 139412 GCGGGAACAGTGATCACGGCATTGGTGACGGTTTTACCAAGGTATGCCTCGGCAGTTTCC 139471 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404 ||||| ||| | | |||||| | || ||||||| | | ||| | || | Sbjct 139472 TTCATCTTAACCAGGACCATTGAGCTCACTTCTTCTGGGAAGAAAGTCTTCGTCTCTCCT 139531 Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464 | ||| ||||| | | ||||| |||| || ||| ||| |||||||||||| | Sbjct 139532 TTGTATTGAACTTCGATTTTGGGTTTTCCACCATCACTAACAACGGTAAATGGCCAGTGT 139591 Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 ||||| |||| ||||| | |||| | ||| | ||| || | || ||| ||||| Sbjct 139592 TTCATGTCTGCCTGAACTGTGAGGTCCTCAAAGCGGCGACCGATCAGTCTTTTGGCATC 139650 >seq1768 Length=267506 Score = 275 bits (304), Expect = 5e-68 Identities = 949/1463 (65%), Gaps = 33/1463 (2%) Strand=Plus/Plus Query 517271 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 517330 ||||| ||||| || |||| |||||| || || || || || || || || | |||| Sbjct 225940 AGAATTCCATTAGCGTCCATATCAAAAGTCACCTCGATCTGCGGAACTCCGCGAGGAGCT 225999 Query 517331 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 517390 |||| || || | | ||| | || || ||| || || || || | ||| Sbjct 226000 GGTGCAATTCCACTTAGCTCGAATTTACCAAGCAGATTGTTGTCCTTTGTCATAGCACGT 226059 Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 |||||||| |||| ||| || || ||| ||| |||||| || | || || ||||| | | Sbjct 226060 TCACCCTCAAAAACTTGAATCGTTACTCCAGGTTGATTGTCAGCGTACGTGGTAAAGA-T 226118 Query 517451 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 |||| | || ||||| || ||| | || | || || || |||||||||| || || Sbjct 226119 CTGGGTCTTCTTACAGGGGATTCGAGCATTACGTTCTATGATGTTGGTCATAACCCCGCC 226178 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 || || || | || ||||||||||| | ||| ||||| |||| | || |||||| | Sbjct 226179 AGCAGTCTCAATCCCCAGAGAAAGAGGGGCGACGTCAACCAGGAGGACATCTTGAAGGCT 226238 Query 517570 T----TCATCAGTT--TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 || | || | ||| ||||||||||| || | |||||| || || || || Sbjct 226239 GGAGGTCTTGCTTTCTTCTCCACTGAGAATAGCTGCCTGTACAGCAGCGCCGTAAGCTAC 226298 Query 517624 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 517683 ||||| || ||||| | | ||| || | || |||||||| || || || || Sbjct 226299 TGCTTCGTCTGGATTGATGGAGAGATTGAGCTGCTTGCCATTGAAGAAGTTCTGCAGTAG 226358 Query 517684 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742 ||| | ||| || ||||| | ||| || ||||||| ||||| || || | || | Sbjct 226359 GC-TCTGGATCTTGGGTATACGTGTTGAACCACCAACTAGAACAATATCTTGGAT-TGAG 226416 Query 517743 ATTTATC-CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 ||| | || |||| ||| | | | |||||||||| || || | |||||| ||| Sbjct 226417 CTTTTGCTCATCTTTGCATCAAGAAGAGCTTTTTCAACTGGCTCTAATGTCGCTCTGAAC 226476 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 | |||| ||||||||| || || || || | || | || ||||||| || Sbjct 226477 AGATCTGCACAAAGTTCCTCAAAGCGTGCCCTTGAAATTCTAGTATAGAAATCAATGCCA 226536 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 517921 || || | || || | ||| | || | | || ||| || || | |||||| || Sbjct 226537 TCAAAGAGAGCGTCGATTTCGAGGGTTGCCTCGGTACTAGAGGAAAGAGTACGTTTTGCT 226596 Query 517922 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATTGATTCAAATCTGTTTT 517980 |||||| ||| || | | | || | || ||| | ||| | | ||| | || Sbjct 226597 CGTTCAGCTGCAGTACGCAAACGGCGAATAGCACGTTGGTTATTCCTGAGATTCT-TCTT 226655 Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCA 518038 |||||||||| || |||| || | ||| | ||||| || ||||| ||||| Sbjct 226656 GTATTTTCTCTCAAATTCTTTTGCAAA--ATGCTCGACAAGCCGCGAGTCAAAGTCTTCC 226713 Query 518039 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT---CAAGA 518095 || ||||| | ||||| ||||| || | |||| | ||| || | ||| ||| Sbjct 226714 CCACCCAAATGAGTATCTCCTGCAGTTGACTTTACCTCGAATAGCGAACCTTGATCAATT 226773 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 |||| | | |||||| |||||||||||||| ||||||||| || || || |||| Sbjct 226774 GACAGGATCGACACATCAAAGGTTCCACCACCCAGATCAAAAATCAGAACGTTTCGTTCT 226833 Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 | | |||| || || || ||||| || | || ||||| || || || || |||||| Sbjct 226834 CCCTGTAGGTTCTTGTCTAGTCCATAAGCTAGGGCGGCAGCTGTAGGCTCGTTGATAATT 226893 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 ||||| || || | || || || |||| |||||||| || || || || || || ||| Sbjct 226894 CTCAAGACGTTGATGCCGGCTATGGTTCCCGCATCTTTGGTTGCCTGCCTCTGAGAGTCG 226953 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 || || || || || ||||||||||| || || | | | || || | |||| Sbjct 226954 TTGAAGTAGGCTGGGACAGTAATAACTGCGTCTTTGATCTTTTGTCCGAGGAAAGCCTCG 227013 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 || || | ||||||||| | | || |||||| |||| ||||||| ||| | Sbjct 227014 GCTGTCTCCTTCATTTTAGTCAGAACCATTGAACTGATTTCTTCTGGG-----TTGAATC 227068 Query 518396 GATTCATTTTGATATGATACT-----TCAAAATATGGTTTATTACCAACATTAATAACTT 518450 | || | | | | | ||| || | | ||||| | | || ||| Sbjct 227069 GTTTTTTCTCGCCACAAAACTCCACCTCGATCTTGGGTTTTCCTGCCTCTCCAACAACGC 227128 Query 518451 TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAATT 518509 || ||||| | || || || || | |||||| |||| ||| | || || Sbjct 227129 GGAAAGGCCAATGCTTGATGTCATTCTGGA-TCTTTGGATCATCGAAACGCCGGCCGATC 227187 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 || || || || || || | ||| || | || || | || | |||| ||||| || Sbjct 227188 AAGCGCTTCGCGTCGAACACAGTGTTCGCCGGGTTTAGGGCCACCTGATTCTTGGCAGCG 227247 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || || ||||| | || || || ||||||| ||||| || ||||| || || ||| Sbjct 227248 TCGCCGATCAGCCGCTCGGTATCCGTAAATGCCACATAGCTGGGTGTTGTTCGGTTTCCT 227307 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 518689 || ||||| || || ||||| ||||| || | ||||| || || || || | | || Sbjct 227308 TGGTCATTTGCGATTATTTCGACTTTTCCTTGCTGCCAAACTCCGACGCAGGAATACGTC 227367 Query 518690 GTTCCTAAATCAATACCAATAGC 518712 || || | ||||| || || || Sbjct 227368 GTACCAAGGTCAATTCCGATTGC 227390 >seq1846 Length=281985 Score = 123 bits (136), Expect = 2e-22 Identities = 174/241 (72%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| |||||||||||||| | || | || |||| |||| ||| | || Sbjct 58830 TCAAAGTCTTCACCTCCCAAATGGGTGTCACCGTTTGTAGACACAACTTCGAACACACCG 58771 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATC-AAAAATAAGTAC 518145 | |||| || ||| ||| | || ||| || |||||||||| ||| || | |||| || Sbjct 58770 TTGTCAATAGTCAAGAGACTGACGTCAAAAGTACCACCACCCAGATCGAATACTAAG-AC 58712 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 |||| | ||| | | || || |||||||| || |||| |||||||| ||||| || Sbjct 58711 ATTCTTCTCT---CCATCCTTCTTGTCAAGACCGTAAGCAATTGCAGCAGCCGTTGGCTC 58655 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| || ||||||| |||||| ||||||| ||| |||| |||||||| || || ||| | Sbjct 58654 ATTTATGATTCTCATAACATTCAGACCAGAAATAGTTCCAGCATCTTTGGTTGCCTGTTT 58595 Query 518266 T 518266 | Sbjct 58594 T 58594 >seq2824 Length=230198 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 ||||| | ||||| || ||||||||||| |||||||| || |||| ||| | ||| ||| Sbjct 23363 TTATCCATGCCATAAGCTAAAGCAGCAGCTGTTGGTTCGTTGATAACTCTGAGAACGTTA 23422 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || |||||| || ||||| ||||| ||||| || || ||||| || || || || Sbjct 23423 AGGCCGGCAATTTGCCCAGCATCCTTAGTTGCTTGCCTCTGAGAATCATTGAAGTAGGCC 23482 Query 518288 GGAACAGT 518295 ||||| || Sbjct 23483 GGAACCGT 23490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780597953841238