Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq4302 136 5e-27
>seq4302
Length=777177
Score = 136 bits (150), Expect = 5e-27
Identities = 327/486 (67%), Gaps = 14/486 (3%)
Strand=Plus/Plus
Query 154626 TTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATAC 154685
|| ||||| ||| || | || ||||| || |||||| || ||| ||||| ||
Sbjct 158858 TTTCAACCAAACAGTGGTGCGCAAGGTGAATACGCAGGATTGAGAGCTATCCAGTGTTA- 158916
Query 154686 CATCAAGGATCAGGAGATGATA---AAAGAAATGTATGTTTGATACCAGAGTCAGCACAT 154742
||| | ||| | | |||| | || | || ||| ||||||||| || |||||
Sbjct 158917 --TCACGAATCGCGGGGTGATGCCCACAGGCAAGTTTGTCTGATACCAGTTTCTGCACAC 158974
Query 154743 GGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTG--TCAAGTGTG 154800
|| || ||||| ||| || |||||||||||| |||| || | ||| ||| |
Sbjct 158975 GGCACAAATCCAGCTTCAGCACAAATGGCAGGGATGCGTGTTG-AGCCGATTCATGTGAG 159033
Query 154801 ATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATT-T 154859
| | |||||| | ||||| || || || |||| | || |||||| |
Sbjct 159034 AAAA-GATGGTTCTGTCGACATAGTTCATTTACAG--GAAATGATAGATAAATACAAAGT 159090
Query 154860 GAACTG-TCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACAT 154918
||| | || ||| | ||||| || || ||||| || ||||||| || ||| | |||
Sbjct 159091 GAATTTATCCTGTCTAATGATCACTTATCCATCCACCAATGGTGTCTTCGAAGAAACCAT 159150
Query 154919 TAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAA 154978
| | || || | || || || || ||| || |||||||| ||||||||||| ||
Sbjct 159151 TGCCGATATTTGCGAAATGGTCCACAACGGTGGAGGGCAGGTATACCTTGATGGAGCTAA 159210
Query 154979 TCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCT 155038
| ||||||||||| ||||| | ||| |||| || || || || | ||| |
Sbjct 159211 CATGAATGCACAGGTTGGACTGTGCAGACCTGGTGATTACGGAAGCGACGTTTCACATTT 159270
Query 155039 AAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 155098
||| ||||| || ||||| || |||||||| || |||||||| ||||||||||| || ||
Sbjct 159271 AAATTTACACAAGACATTTTGCATTCCACACGGCGGTGGAGGACCTGGCGTAGGGCCAAT 159330
Query 155099 AGGTGT 155104
|| ||
Sbjct 159331 TGGGGT 159336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579180052756320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |