Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4302 136 5e-27 >seq4302 Length=777177 Score = 136 bits (150), Expect = 5e-27 Identities = 327/486 (67%), Gaps = 14/486 (3%) Strand=Plus/Plus Query 154626 TTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATAC 154685 || ||||| ||| || | || ||||| || |||||| || ||| ||||| || Sbjct 158858 TTTCAACCAAACAGTGGTGCGCAAGGTGAATACGCAGGATTGAGAGCTATCCAGTGTTA- 158916 Query 154686 CATCAAGGATCAGGAGATGATA---AAAGAAATGTATGTTTGATACCAGAGTCAGCACAT 154742 ||| | ||| | | |||| | || | || ||| ||||||||| || ||||| Sbjct 158917 --TCACGAATCGCGGGGTGATGCCCACAGGCAAGTTTGTCTGATACCAGTTTCTGCACAC 158974 Query 154743 GGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTG--TCAAGTGTG 154800 || || ||||| ||| || |||||||||||| |||| || | ||| ||| | Sbjct 158975 GGCACAAATCCAGCTTCAGCACAAATGGCAGGGATGCGTGTTG-AGCCGATTCATGTGAG 159033 Query 154801 ATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATT-T 154859 | | |||||| | ||||| || || || |||| | || |||||| | Sbjct 159034 AAAA-GATGGTTCTGTCGACATAGTTCATTTACAG--GAAATGATAGATAAATACAAAGT 159090 Query 154860 GAACTG-TCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACAT 154918 ||| | || ||| | ||||| || || ||||| || ||||||| || ||| | ||| Sbjct 159091 GAATTTATCCTGTCTAATGATCACTTATCCATCCACCAATGGTGTCTTCGAAGAAACCAT 159150 Query 154919 TAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAA 154978 | | || || | || || || || ||| || |||||||| ||||||||||| || Sbjct 159151 TGCCGATATTTGCGAAATGGTCCACAACGGTGGAGGGCAGGTATACCTTGATGGAGCTAA 159210 Query 154979 TCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCT 155038 | ||||||||||| ||||| | ||| |||| || || || || | ||| | Sbjct 159211 CATGAATGCACAGGTTGGACTGTGCAGACCTGGTGATTACGGAAGCGACGTTTCACATTT 159270 Query 155039 AAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 155098 ||| ||||| || ||||| || |||||||| || |||||||| ||||||||||| || || Sbjct 159271 AAATTTACACAAGACATTTTGCATTCCACACGGCGGTGGAGGACCTGGCGTAGGGCCAAT 159330 Query 155099 AGGTGT 155104 || || Sbjct 159331 TGGGGT 159336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579180052756320