Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq4302 145 9e-30
>seq4302
Length=777177
Score = 145 bits (160), Expect = 9e-30
Identities = 329/486 (68%), Gaps = 14/486 (3%)
Strand=Plus/Plus
Query 159301 TTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATAC 159360
|| ||||| ||| || | || ||||| || |||||| || ||| ||||| ||
Sbjct 158858 TTTCAACCAAACAGTGGTGCGCAAGGTGAATACGCAGGATTGAGAGCTATCCAGTGTTA- 158916
Query 159361 CATCAAGGATCAGGAGATGATA---AAAGAAATGTATGTTTGATACCAGAGTCAGCACAT 159417
||| | ||| | | |||| | || | || ||| ||||||||| || |||||
Sbjct 158917 --TCACGAATCGCGGGGTGATGCCCACAGGCAAGTTTGTCTGATACCAGTTTCTGCACAC 158974
Query 159418 GGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTG--TCAAGTGTG 159475
|| || ||||| || |||||| |||||||||||| |||| || | ||| ||| |
Sbjct 158975 GGCACAAATCCAGCTTCAGCACAAATGGCAGGGATGCGTGTTG-AGCCGATTCATGTGAG 159033
Query 159476 ATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATT-T 159534
| | ||||| | ||||| || || || |||| | || |||||| |
Sbjct 159034 AAAA-GATGGTTCTGTCGACATAGTTCATTTACAG--GAAATGATAGATAAATACAAAGT 159090
Query 159535 GAACTG-TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACAT 159593
||| | || ||| | ||||| || |||||||| || ||||||| || ||| || |||
Sbjct 159091 GAATTTATCCTGTCTAATGATCACTTATCCATCCACCAATGGTGTCTTCGAAGAAACCAT 159150
Query 159594 CAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAA 159653
| || || | || || || | ||| || |||||||| |||||||| || ||
Sbjct 159151 TGCCGATATTTGCGAAATGGTCCACAACGGTGGAGGGCAGGTATACCTTGATGGAGCTAA 159210
Query 159654 TCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCT 159713
| ||||||||||| || || | ||| |||| || || || || | ||| |
Sbjct 159211 CATGAATGCACAGGTTGGACTGTGCAGACCTGGTGATTACGGAAGCGACGTTTCACATTT 159270
Query 159714 AAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 159773
||| ||||| |||||||| || |||||||| || |||||||| ||||||||||| || ||
Sbjct 159271 AAATTTACACAAGACATTTTGCATTCCACACGGCGGTGGAGGACCTGGCGTAGGGCCAAT 159330
Query 159774 TGGTGT 159779
||| ||
Sbjct 159331 TGGGGT 159336
Score = 89.7 bits (98), Expect = 6e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 158579 TAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCA 158638
||||||| || || ||||| || || |||||||||||||| || || ||||| |||||||
Sbjct 157944 TAGCACTTCAAACCAGAGAACAACACATCAGAAGAGACAAGGCTACAAGTAATATCTGCA 158003
Query 158639 CAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690
| || ||||| || || || || ||||| | | ||||||| ||||| ||
Sbjct 158004 CTGCTCAAGCTCTACTCGCCAACATGTCCGCTATGTATGCAGTTTATCACGG 158055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588017953055280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |