Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq4302 145 9e-30 >seq4302 Length=777177 Score = 145 bits (160), Expect = 9e-30 Identities = 329/486 (68%), Gaps = 14/486 (3%) Strand=Plus/Plus Query 159301 TTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATAC 159360 || ||||| ||| || | || ||||| || |||||| || ||| ||||| || Sbjct 158858 TTTCAACCAAACAGTGGTGCGCAAGGTGAATACGCAGGATTGAGAGCTATCCAGTGTTA- 158916 Query 159361 CATCAAGGATCAGGAGATGATA---AAAGAAATGTATGTTTGATACCAGAGTCAGCACAT 159417 ||| | ||| | | |||| | || | || ||| ||||||||| || ||||| Sbjct 158917 --TCACGAATCGCGGGGTGATGCCCACAGGCAAGTTTGTCTGATACCAGTTTCTGCACAC 158974 Query 159418 GGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTG--TCAAGTGTG 159475 || || ||||| || |||||| |||||||||||| |||| || | ||| ||| | Sbjct 158975 GGCACAAATCCAGCTTCAGCACAAATGGCAGGGATGCGTGTTG-AGCCGATTCATGTGAG 159033 Query 159476 ATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATT-T 159534 | | ||||| | ||||| || || || |||| | || |||||| | Sbjct 159034 AAAA-GATGGTTCTGTCGACATAGTTCATTTACAG--GAAATGATAGATAAATACAAAGT 159090 Query 159535 GAACTG-TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACAT 159593 ||| | || ||| | ||||| || |||||||| || ||||||| || ||| || ||| Sbjct 159091 GAATTTATCCTGTCTAATGATCACTTATCCATCCACCAATGGTGTCTTCGAAGAAACCAT 159150 Query 159594 CAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAA 159653 | || || | || || || | ||| || |||||||| |||||||| || || Sbjct 159151 TGCCGATATTTGCGAAATGGTCCACAACGGTGGAGGGCAGGTATACCTTGATGGAGCTAA 159210 Query 159654 TCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCT 159713 | ||||||||||| || || | ||| |||| || || || || | ||| | Sbjct 159211 CATGAATGCACAGGTTGGACTGTGCAGACCTGGTGATTACGGAAGCGACGTTTCACATTT 159270 Query 159714 AAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 159773 ||| ||||| |||||||| || |||||||| || |||||||| ||||||||||| || || Sbjct 159271 AAATTTACACAAGACATTTTGCATTCCACACGGCGGTGGAGGACCTGGCGTAGGGCCAAT 159330 Query 159774 TGGTGT 159779 ||| || Sbjct 159331 TGGGGT 159336 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 158579 TAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCA 158638 ||||||| || || ||||| || || |||||||||||||| || || ||||| ||||||| Sbjct 157944 TAGCACTTCAAACCAGAGAACAACACATCAGAAGAGACAAGGCTACAAGTAATATCTGCA 158003 Query 158639 CAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 | || ||||| || || || || ||||| | | ||||||| ||||| || Sbjct 158004 CTGCTCAAGCTCTACTCGCCAACATGTCCGCTATGTATGCAGTTTATCACGG 158055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588017953055280