Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 163 6e-35
seq4480 125 2e-23
seq2212 125 2e-23
seq1458 96.9 8e-15
>seq3846
Length=171336
Score = 163 bits (180), Expect = 6e-35
Identities = 169/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981
|| || ||||| || || | || || || |||||||| ||||| || | |||| ||||
Sbjct 15437 AGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAG-GTTCG 15495
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| |||||||| || || ||||| ||||| ||||||||||| |||||||||||
Sbjct 15496 TCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTC 15555
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
||||||||| |||||| || ||||||||||| ||||| || || ||||| | |||
Sbjct 15556 TTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGT 15615
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || || || | ||| || || || | ||||||
Sbjct 15616 AATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || ||||| |||||||| || ||||| || | |||||| | |||||||||
Sbjct 15674 ACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCG 15733
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || || || || ||||| | || || |||||||||||||| || |||||||| |||
Sbjct 15734 AGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGA 15793
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| || |||||||| ||||||||| || || || | || | ||||||
Sbjct 15794 ATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTT 15853
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| || || | ||||||
Sbjct 15854 CCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| | ||| || ||||| |||||||| ||||||||||| || |||| |||||| | |
Sbjct 15209 AGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGC 15268
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||| || || || || || | || || |||||||| || || || ||
Sbjct 15269 CCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCC 15328
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||||||||||||| || |||||||| || || || || || ||||| | |||
Sbjct 15329 TTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTA 15388
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||||||| || | |||||| || || | ||||||
Sbjct 15389 ATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 149 bits (164), Expect = 1e-30
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || |||||||| ||||| || ||||| ||||| || | ||| || | |||||||||
Sbjct 14989 AACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTC 15048
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||| || |||||||| || | | || |||||||||||||| ||||||||||||||
Sbjct 15049 CAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 15108
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||||| |||||| || ||||| ||||| || || || || | ||| | || ||
Sbjct 15109 GATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| || || | |||||
Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| |||||||| || ||||| || || |||||||| | ||| || | ||||| ||
Sbjct 16358 ACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCCTCA 16417
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| | | || |||||||| || || || || |||||||||
Sbjct 16418 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 16477
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| ||||| ||||| ||||||||| || ||||||||||||| || ||
Sbjct 16478 ATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTTTTG 16537
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || || || ||||| | |||||
Sbjct 16538 CCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || ||||| || ||||| || || ||||||| ||| || | |||||||||
Sbjct 16814 ACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCG 16873
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || ||||| ||||| | || || |||||||| ||||| || |||||||| |||
Sbjct 16874 AGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGA 16933
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || || || || || ||| ||||| ||||| | |||||
Sbjct 16934 ATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTC 16993
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || || || | |||||
Sbjct 16994 CCCGTCAAGGTCTTGACAAAAATCTGCAT 17022
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| | ||| | ||||||||| || ||||| || |||||||| || | | || |
Sbjct 15893 AGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGT 15952
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| ||||| |||||||| || || ||||| | || || |||||||||||||| || ||
Sbjct 15953 CCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCC 16012
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|||||||||||||| ||| || || ||||| ||||| || || ||||| | ||
Sbjct 16013 TTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTG 16072
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
| || || || || | ||| || ||||| | |||||||
Sbjct 16073 ATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| || || || || || || ||||||| |||||| | ||||| |||
Sbjct 16586 ACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCG 16645
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| | || || |||||||| || || || |||||||| ||
Sbjct 16646 AGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGG 16705
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| || || || ||||| ||||| ||| || ||||||||||| | || ||
Sbjct 16706 ATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTG 16765
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || || || ||||| | |||||
Sbjct 16766 CCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
||||| ||||||||||||||||| || | | ||| | || ||||| |||||||| ||
Sbjct 16142 GTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCG 16201
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
||||| || | || || || ||||||||||| || |||||||||||||| ||| |||
Sbjct 16202 GCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTT 16261
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| || ||||| ||||| || || ||||| | || | || || || || | ||
Sbjct 16262 ACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTC 16321
Query 195124 TTTACGAACACTTGCAT 195140
|| || || | ||||||
Sbjct 16322 TTGACAAAGATTTGCAT 16338
>seq4480
Length=409792
Score = 125 bits (138), Expect = 2e-23
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| || | |||||| | ||||| ||||| || || || || |||||
Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
||||| || ||||||||||| || || |||||||| || ||||| |||||| || ||
Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
||||| || || ||||| ||||| || | ||||| || |||| || ||||||||
Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682
Query 195133 ACTTGCATT 195141
| ||||||
Sbjct 402681 ATCTGCATT 402673
>seq2212
Length=252600
Score = 125 bits (138), Expect = 2e-23
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| || | |||||| | ||||| ||||| || || || || |||||
Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
||||| || ||||||||||| || || |||||||| || ||||| |||||| || ||
Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
||||| || || ||||| ||||| || | ||||| || |||| || ||||||||
Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470
Query 195133 ACTTGCATT 195141
| ||||||
Sbjct 250471 ATCTGCATT 250479
>seq1458
Length=295496
Score = 96.9 bits (106), Expect = 8e-15
Identities = 144/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 48959 TCCAGCTTCGAATTCTCCCTTTCTCGCAGAAACGACAAGTACACATACATCCGCATTTGC 49018
||||| ||| ||||| || ||||||||||||| ||||| || || ||| || | ||
Sbjct 74356 TCCAGTTTCAAATTCACCTTTTCTCGCAGAAATTACAAGGACGGCTAAATCAGCCTGAGC 74415
Query 49019 AAGGCCTTCGATGGCGTTGGGTATAAAGTTTCTGTGACCCGGAGCATCAAGAATTGTAAA 49078
| || |||| ||| |||| ||| || |||| || || ||||| | |||||||||
Sbjct 74416 AGCACCACCGATCATGTTTGGTACAAAACTTTTGTGTCCTGGCGCATCCAAAATTGTAAA 74475
Query 49079 ATTCTTATTGTTCCAT-ACAAAAGGCTCTCGGGCAAACTCTACAGTTTTTCCTCTTTTTC 49137
| ||| | ||| | ||||| | | ||| ||| ||| |||||||||||| | | ||
Sbjct 74476 GTGCTT-TCTTTCAGTCTCAAAATACGCCCGGCCAACCTCGACAGTTTTTCCTTTCTCTC 74534
Query 49138 TTTCTTCTGGGTCAGTGTCCAG 49159
| ||||| ||| || |||||
Sbjct 74535 TCTCTTCCTGGTTGGTATCCAG 74556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109417304501141
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