Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3846 163 6e-35 seq4480 125 2e-23 seq2212 125 2e-23 seq1458 96.9 8e-15 >seq3846 Length=171336 Score = 163 bits (180), Expect = 6e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 || || ||||| || || | || || || |||||||| ||||| || | |||| |||| Sbjct 15437 AGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAG-GTTCG 15495 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || || ||||| ||||| ||||||||||| ||||||||||| Sbjct 15496 TCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTC 15555 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| |||||| || ||||||||||| ||||| || || ||||| | ||| Sbjct 15556 TTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGT 15615 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||| || || || | |||||| Sbjct 15616 AATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||| |||||||| || ||||| || | |||||| | ||||||||| Sbjct 15674 ACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCG 15733 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| | || || |||||||||||||| || |||||||| ||| Sbjct 15734 AGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGA 15793 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || |||||||| ||||||||| || || || | || | |||||| Sbjct 15794 ATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTT 15853 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| || || | |||||| Sbjct 15854 CCAGTTAATGTTTTGACAAAAATTTGCAT 15882 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| || ||||| |||||||| ||||||||||| || |||| |||||| | | Sbjct 15209 AGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGC 15268 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | || || |||||||| || || || || Sbjct 15269 CCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCC 15328 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||||||| || |||||||| || || || || || ||||| | ||| Sbjct 15329 TTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTA 15388 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | |||||| || || | |||||| Sbjct 15389 ATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || |||||||| ||||| || ||||| ||||| || | ||| || | ||||||||| Sbjct 14989 AACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTC 15048 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || |||||||| || | | || |||||||||||||| |||||||||||||| Sbjct 15049 CAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 15108 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| |||||| || ||||| ||||| || || || || | ||| | || || Sbjct 15109 GATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| || || | ||||| Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || ||||| || || |||||||| | ||| || | ||||| || Sbjct 16358 ACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCCTCA 16417 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || |||||||| || || || || ||||||||| Sbjct 16418 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 16477 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| ||||| ||||||||| || ||||||||||||| || || Sbjct 16478 ATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTTTTG 16537 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || ||||| | ||||| Sbjct 16538 CCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||| || ||||| || || ||||||| ||| || | ||||||||| Sbjct 16814 ACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCG 16873 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| | || || |||||||| ||||| || |||||||| ||| Sbjct 16874 AGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGA 16933 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || || || || || ||| ||||| ||||| | ||||| Sbjct 16934 ATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTC 16993 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 16994 CCCGTCAAGGTCTTGACAAAAATCTGCAT 17022 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| | ||||||||| || ||||| || |||||||| || | | || | Sbjct 15893 AGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGT 15952 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| |||||||| || || ||||| | || || |||||||||||||| || || Sbjct 15953 CCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCC 16012 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| ||| || || ||||| ||||| || || ||||| | || Sbjct 16013 TTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTG 16072 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||| || ||||| | ||||||| Sbjct 16073 ATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || || || || || || ||||||| |||||| | ||||| ||| Sbjct 16586 ACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCG 16645 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | || || |||||||| || || || |||||||| || Sbjct 16646 AGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGG 16705 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || || ||||| ||||| ||| || ||||||||||| | || || Sbjct 16706 ATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTG 16765 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || ||||| | ||||| Sbjct 16766 CCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||||||||||||||| || | | ||| | || ||||| |||||||| || Sbjct 16142 GTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCG 16201 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || || || ||||||||||| || |||||||||||||| ||| ||| Sbjct 16202 GCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTT 16261 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| || || ||||| | || | || || || || | || Sbjct 16262 ACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTC 16321 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 16322 TTGACAAAGATTTGCAT 16338 >seq4480 Length=409792 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | |||||| | ||||| ||||| || || || || ||||| Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| || ||||||||||| || || |||||||| || ||||| |||||| || || Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||||| || || ||||| ||||| || | ||||| || |||| || |||||||| Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682 Query 195133 ACTTGCATT 195141 | |||||| Sbjct 402681 ATCTGCATT 402673 >seq2212 Length=252600 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | |||||| | ||||| ||||| || || || || ||||| Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| || ||||||||||| || || |||||||| || ||||| |||||| || || Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||||| || || ||||| ||||| || | ||||| || |||| || |||||||| Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470 Query 195133 ACTTGCATT 195141 | |||||| Sbjct 250471 ATCTGCATT 250479 >seq1458 Length=295496 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 48959 TCCAGCTTCGAATTCTCCCTTTCTCGCAGAAACGACAAGTACACATACATCCGCATTTGC 49018 ||||| ||| ||||| || ||||||||||||| ||||| || || ||| || | || Sbjct 74356 TCCAGTTTCAAATTCACCTTTTCTCGCAGAAATTACAAGGACGGCTAAATCAGCCTGAGC 74415 Query 49019 AAGGCCTTCGATGGCGTTGGGTATAAAGTTTCTGTGACCCGGAGCATCAAGAATTGTAAA 49078 | || |||| ||| |||| ||| || |||| || || ||||| | ||||||||| Sbjct 74416 AGCACCACCGATCATGTTTGGTACAAAACTTTTGTGTCCTGGCGCATCCAAAATTGTAAA 74475 Query 49079 ATTCTTATTGTTCCAT-ACAAAAGGCTCTCGGGCAAACTCTACAGTTTTTCCTCTTTTTC 49137 | ||| | ||| | ||||| | | ||| ||| ||| |||||||||||| | | || Sbjct 74476 GTGCTT-TCTTTCAGTCTCAAAATACGCCCGGCCAACCTCGACAGTTTTTCCTTTCTCTC 74534 Query 49138 TTTCTTCTGGGTCAGTGTCCAG 49159 | ||||| ||| || ||||| Sbjct 74535 TCTCTTCCTGGTTGGTATCCAG 74556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109417304501141