Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3846 127 1e-24 seq4480 96.9 2e-15 seq2212 96.9 2e-15 >seq3846 Length=171336 Score = 127 bits (140), Expect = 1e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| |||||||| || ||||| | || |||| || ||||||||||||||||| Sbjct 16603 TTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAA 16662 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| || ||||||||| | || | ||||| ||||| ||||| ||| || Sbjct 16663 GATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATT 16722 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| ||| |||||||| || | ||| |||||||| || || | |||||||| Sbjct 16723 TTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCAC 16782 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 16783 GAAGATCTGCATA 16795 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || ||| ||||||| || | || ||| || |||||||| ||||| || Sbjct 15428 CCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGAC 15487 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||||| |||| || ||||| ||||| ||||| || ||||| || |||||| | || Sbjct 15488 AAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGA 15547 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| || || ||| ||| | || | || |||||| || Sbjct 15548 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACT 15607 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| |||||||| || || |||||||||||||| || ||||| Sbjct 15608 TCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| |||||||| ||||| | || |||| |||||||||||||| ||||| Sbjct 15236 TCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAA 15295 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| || ||||||||| | || | ||||||||||| ||| || ||| ||| Sbjct 15296 ATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTC 15355 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | ||| ||||| || || | || || || ||||| || ||||| || ||| Sbjct 15356 TCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACA 15415 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 15416 AAAATTTGCATA 15427 Score = 113 bits (124), Expect = 3e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || |||||||| || |||||| | || |||| || ||||||||||| ||||| Sbjct 16831 TTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAA 16890 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||||| ||||| |||||| || || Sbjct 16891 GATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATT 16950 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| ||| || ||||| |||| ||| ||||| || ||||| | ||||| || Sbjct 16951 TTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGAC 17010 Query 34970 AAAGATCTGCATATT 34984 ||| |||||||| || Sbjct 17011 AAAAATCTGCATGTT 17025 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||||||||| || || ||||| || | | | ||| | || || Sbjct 15901 AACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTC 15960 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || | || ||||||||| | || | ||||||||||| Sbjct 15961 AAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTG 16020 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||| || || | | || | || ||||||||| || | || |||||||| Sbjct 16021 AATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTT 16080 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| || || || ||||| Sbjct 16081 GCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || |||| ||||||||||| || || ||| Sbjct 15008 TCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAAT 15067 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| | ||||||||| | || | || || ||||| || || ||||| | Sbjct 15068 ATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTT 15127 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| |||||||| || | ||| || ||||| || || | || || ||| Sbjct 15128 TCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACA 15187 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 15188 AAGATCTGCATA 15199 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| || || ||||| | || |||| || |||||||| |||||||| Sbjct 16375 TTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAA 16434 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||||||| | || | ||||||||||| ||| ||| || ||| Sbjct 16435 GATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTT 16494 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || ||||| || || | ||| || ||||| || || | ||||| || Sbjct 16495 TTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGAC 16554 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 16555 GAAGATCTGCATA 16567 >seq4480 Length=409792 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| ||||| | || |||| || || ||||| |||||||| || Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| ||||||||| | || | ||||| ||||| || || ||||| | | Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || ||||| || || | || ||||| || ||||| || ||||| || ||| Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682 Query 34974 ATCTGCAT 34981 |||||||| Sbjct 402681 ATCTGCAT 402674 >seq2212 Length=252600 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| ||||| | || |||| || || ||||| |||||||| || Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| ||||||||| | || | ||||| ||||| || || ||||| | | Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || ||||| || || | || ||||| || ||||| || ||||| || ||| Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470 Query 34974 ATCTGCAT 34981 |||||||| Sbjct 250471 ATCTGCAT 250478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324615704877144