Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 127 1e-24
seq4480 96.9 2e-15
seq2212 96.9 2e-15
>seq3846
Length=171336
Score = 127 bits (140), Expect = 1e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| |||||||| || ||||| | || |||| || |||||||||||||||||
Sbjct 16603 TTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAA 16662
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|||| || ||||||||| | || | ||||| ||||| ||||| ||| ||
Sbjct 16663 GATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATT 16722
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| | |||| ||| |||||||| || | ||| |||||||| || || | ||||||||
Sbjct 16723 TTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCAC 16782
Query 34970 AAAGATCTGCATA 34982
||||||||||||
Sbjct 16783 GAAGATCTGCATA 16795
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||| | || ||| ||||||| || | || ||| || |||||||| ||||| ||
Sbjct 15428 CCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGAC 15487
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | ||||| |||| || ||||| ||||| ||||| || ||||| || |||||| | ||
Sbjct 15488 AAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGA 15547
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| || || ||||| || || ||| ||| | || | || |||||| ||
Sbjct 15548 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACT 15607
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | ||| |||||||| || || |||||||||||||| || |||||
Sbjct 15608 TCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 113 bits (124), Expect = 3e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || ||||| |||||||| ||||| | || |||| |||||||||||||| |||||
Sbjct 15236 TCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAA 15295
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|||| || ||||||||| | || | ||||||||||| ||| || ||| |||
Sbjct 15296 ATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTC 15355
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
|||| | ||| ||||| || || | || || || ||||| || ||||| || |||
Sbjct 15356 TCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACA 15415
Query 34971 AAGATCTGCATA 34982
|| || ||||||
Sbjct 15416 AAAATTTGCATA 15427
Score = 113 bits (124), Expect = 3e-20
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| || || |||||||| || |||||| | || |||| || ||||||||||| |||||
Sbjct 16831 TTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAA 16890
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | || ||||||||| | || | ||||| ||||| |||||| || ||
Sbjct 16891 GATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATT 16950
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| | |||| ||| || ||||| |||| ||| ||||| || ||||| | ||||| ||
Sbjct 16951 TTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGAC 17010
Query 34970 AAAGATCTGCATATT 34984
||| |||||||| ||
Sbjct 17011 AAAAATCTGCATGTT 17025
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| || ||||||||| || || ||||| || | | | ||| | || ||
Sbjct 15901 AACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTC 15960
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || ||||| || | || ||||||||| | || | |||||||||||
Sbjct 15961 AAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTG 16020
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||| ||| || || | | || | || ||||||||| || | || ||||||||
Sbjct 16021 AATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTT 16080
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||||||||| || || || |||||
Sbjct 16081 GCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| |||||| | || |||| ||||||||||| || || |||
Sbjct 15008 TCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAAT 15067
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|||| | ||||||||| | || | || || ||||| || || ||||| |
Sbjct 15068 ATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTT 15127
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| |||||||| || | ||| || ||||| || || | || || |||
Sbjct 15128 TCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACA 15187
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 15188 AAGATCTGCATA 15199
Score = 100 bits (110), Expect = 2e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| || || ||||| | || |||| || |||||||| ||||||||
Sbjct 16375 TTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAA 16434
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | ||||||||| | || | ||||||||||| ||| ||| || |||
Sbjct 16435 GATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTT 16494
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| | || | || ||||| || || | ||| || ||||| || || | ||||| ||
Sbjct 16495 TTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGAC 16554
Query 34970 AAAGATCTGCATA 34982
||||||||||||
Sbjct 16555 GAAGATCTGCATA 16567
>seq4480
Length=409792
Score = 96.9 bits (106), Expect = 2e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| ||||| | || |||| || || ||||| |||||||| ||
Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
||||| ||||||||| | || | ||||| ||||| || || ||||| | |
Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973
|| | || ||||| || || | || ||||| || ||||| || ||||| || |||
Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682
Query 34974 ATCTGCAT 34981
||||||||
Sbjct 402681 ATCTGCAT 402674
>seq2212
Length=252600
Score = 96.9 bits (106), Expect = 2e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| ||||| | || |||| || || ||||| |||||||| ||
Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
||||| ||||||||| | || | ||||| ||||| || || ||||| | |
Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973
|| | || ||||| || || | || ||||| || ||||| || ||||| || |||
Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470
Query 34974 ATCTGCAT 34981
||||||||
Sbjct 250471 ATCTGCAT 250478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324615704877144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |