Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 120 3e-22
seq3919 107 2e-18
>seq4498
Length=49303
Score = 120 bits (132), Expect = 3e-22
Identities = 226/337 (67%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 47725 TACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTA 47784
|||||||||||||||| | ||||||| |||||||| || | ||||| | ||| |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 47785 TATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAA 47844
|||| |||||||| || || || ||| | | ||| ||||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 47845 AATCAAACTTGTTATTTA-----TAACAAACCTATTAAGTGCTATAGATGCTAGATTACA 47899
|||| | ||| ||| |||||||| | |||| || || ||||||||||||||
Sbjct 41905 AATCGTA--TGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACA 41962
Query 47900 TACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTT 47959
||||| || || | || | | ||||| ||| ||||||| || ||||||| |||||
Sbjct 41963 AACAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTT 42022
Query 47960 GATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017
||| || |||| || || ||||| ||| || || || ||||| |||||
Sbjct 42023 GATTGTGCCCACGTTCTGTTGATTTGATTTGCG--ATTGCAGTGATCTTTGTACAGCATG 42080
Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054
| ||||| |||||||| | |||||| | |||||||
Sbjct 42081 TATGGTGTGCCAGTTTCAACCTGAGAGTTCATGATAG 42117
Score = 116 bits (128), Expect = 4e-21
Identities = 188/268 (70%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 48315 TGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATA 48374
|||||||||||||| || | ||| | ||||||| | ||||| |||||||| || |
Sbjct 42550 TGCCATGGTTCTAAGTAAACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACG 42609
Query 48375 TATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTG 48434
|| || || ||||| ||||| || | ||||| || |||| || | ||| |||||
Sbjct 42610 TACCTTGCTGTATTATTATATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTA 42669
Query 48435 GTTCCCGAAATATAACTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACC 48493
||||| | || ||| | || | ||||| ||| | || | ||| || | ||| ||
Sbjct 42670 GTTCCTGCTATGTAAGTACCTTTGGCTCTGATACAATGTATATTTAAT-CCAACACCTCC 42728
Query 48494 TGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATC 48553
|| ||| ||| || || || |||| | ||||||||||||||||| ||||||||
Sbjct 42729 CGCAGACTTACTTATCAGTGCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATC 42788
Query 48554 ATCTATCATATTTAATAGAAAACAACTA 48581
|| |||| | || |||||||| |||
Sbjct 42789 CTCCTTCATTGTCAAAAGAAAACAGCTA 42816
Score = 93.3 bits (102), Expect = 5e-14
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371
||| ||||| || ||||||||||||||||||| |||| || |||| | || || ||
Sbjct 41192 ATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGT 41251
Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431
||| | ||| || |||||||| || || | |||||| || || ||||| || ||||| |
Sbjct 41252 ATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGG 41311
Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491
|| | | || ||| | ||| || | ||| ||||| | |||
Sbjct 41312 GGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCA 41371
Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539
||||||||||||| ||| |||||||| | ||||| || | |||
Sbjct 41372 GTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATACTGCAAAAT 41419
>seq3919
Length=163912
Score = 107 bits (118), Expect = 2e-18
Identities = 103/132 (78%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507
|||| ||||||||||||||||| ||||||||||| || || ||||| ||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567
|||| || || | |||| || || ||||| || ||||| | ||| ||| |||| |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 19568 TAGGTTCCATTT 19579
||||||| ||
Sbjct 143684 GTGGTTCCAGTT 143695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562077019773720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |