Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4498 120 3e-22 seq3919 107 2e-18 >seq4498 Length=49303 Score = 120 bits (132), Expect = 3e-22 Identities = 226/337 (67%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 47725 TACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTA 47784 |||||||||||||||| | ||||||| |||||||| || | ||||| | ||| | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 47785 TATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAA 47844 |||| |||||||| || || || ||| | | ||| |||| Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 47845 AATCAAACTTGTTATTTA-----TAACAAACCTATTAAGTGCTATAGATGCTAGATTACA 47899 |||| | ||| ||| |||||||| | |||| || || |||||||||||||| Sbjct 41905 AATCGTA--TGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACA 41962 Query 47900 TACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTT 47959 ||||| || || | || | | ||||| ||| ||||||| || ||||||| ||||| Sbjct 41963 AACAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTT 42022 Query 47960 GATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||| || |||| || || ||||| ||| || || || ||||| ||||| Sbjct 42023 GATTGTGCCCACGTTCTGTTGATTTGATTTGCG--ATTGCAGTGATCTTTGTACAGCATG 42080 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 | ||||| |||||||| | |||||| | ||||||| Sbjct 42081 TATGGTGTGCCAGTTTCAACCTGAGAGTTCATGATAG 42117 Score = 116 bits (128), Expect = 4e-21 Identities = 188/268 (70%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 48315 TGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATA 48374 |||||||||||||| || | ||| | ||||||| | ||||| |||||||| || | Sbjct 42550 TGCCATGGTTCTAAGTAAACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACG 42609 Query 48375 TATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTG 48434 || || || ||||| ||||| || | ||||| || |||| || | ||| ||||| Sbjct 42610 TACCTTGCTGTATTATTATATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTA 42669 Query 48435 GTTCCCGAAATATAACTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACC 48493 ||||| | || ||| | || | ||||| ||| | || | ||| || | ||| || Sbjct 42670 GTTCCTGCTATGTAAGTACCTTTGGCTCTGATACAATGTATATTTAAT-CCAACACCTCC 42728 Query 48494 TGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATC 48553 || ||| ||| || || || |||| | ||||||||||||||||| |||||||| Sbjct 42729 CGCAGACTTACTTATCAGTGCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATC 42788 Query 48554 ATCTATCATATTTAATAGAAAACAACTA 48581 || |||| | || |||||||| ||| Sbjct 42789 CTCCTTCATTGTCAAAAGAAAACAGCTA 42816 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| ||||| || ||||||||||||||||||| |||| || |||| | || || || Sbjct 41192 ATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGT 41251 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||| | ||| || |||||||| || || | |||||| || || ||||| || ||||| | Sbjct 41252 ATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGG 41311 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 || | | || ||| | ||| || | ||| ||||| | ||| Sbjct 41312 GGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCA 41371 Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 ||||||||||||| ||| |||||||| | ||||| || | ||| Sbjct 41372 GTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATACTGCAAAAT 41419 >seq3919 Length=163912 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 |||| ||||||||||||||||| ||||||||||| || || ||||| ||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 |||| || || | |||| || || ||||| || ||||| | ||| ||| |||| | Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683 Query 19568 TAGGTTCCATTT 19579 ||||||| || Sbjct 143684 GTGGTTCCAGTT 143695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562077019773720