Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3846 152 4e-32 seq713 105 5e-18 >seq3846 Length=171336 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | || | ||||||||| | ||| ||||||||||| |||||||| || | Sbjct 16110 TTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCG 16169 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | || || | ||||| || || || ||||||||||| ||||| || | Sbjct 16170 ACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAG 16229 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || ||||| |||||||| ||| |||||| |||| | |||||| || | || | Sbjct 16230 GAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGA 16289 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | |||| |||||||| |||| || || ||||| || ||||| Sbjct 16290 CTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | |||||| ||||| || || || || ||||| || | | || | |||| || Sbjct 14989 AACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTC 15048 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || || || ||||| ||||| || | ||| || || || ||||| |||||||| ||||| Sbjct 15049 CAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 15108 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| || ||| |||| | |||||||||| || || || | |||| ||||| Sbjct 15109 GATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || ||||| ||||| |||||||| Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||||||||| || ||||| || | | ||| | | |||| || | ||| Sbjct 15680 TGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGT 15739 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 15740 TTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTA 15799 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| || | || || || | ||||| || || || ||| Sbjct 15800 GCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTT 15859 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || ||||| Sbjct 15860 AATGTTTTGACAAAAATTTGCAT 15882 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || ||||| ||||||||||| || |||||||| || | | || | | || || Sbjct 15901 AACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTC 15960 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || ||||| ||||||||||| || || || ||||| || || || ||||| Sbjct 15961 AAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTG 16020 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| |||||| |||| | |||||| || | || ||||| | |||| ||||| Sbjct 16021 AATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTT 16080 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | ||| || || || || ||||| Sbjct 16081 GCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 101257 TAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATC 101316 |||||| | ||| | ||| ||||| ||||| || ||||| || | | |||| |||| Sbjct 15442 TAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATC 15501 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 || | ||||| || ||||| || | |||||||| || || |||||||||||||| || Sbjct 15502 TTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTC 15561 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 ||| |||||| |||||| | || | ||||| || | || ||||| | || | || Sbjct 15562 TTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGT 15621 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || | ||| || ||||| || ||||| Sbjct 15622 TTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||| ||||||||| || || ||||| ||||| || |||| | ||| | |||| || Sbjct 15217 AACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTC 15276 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || || || || ||||| || || | ||| || || || || || || || || ||||| Sbjct 15277 CAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 15336 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||||| ||| || | |||| || ||||| | || ||||| | ||| | || || Sbjct 15337 AATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTT 15396 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| ||||| || ||||| Sbjct 15397 TCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | |||||| || |||||||| || || |||||||| | Sbjct 16340 CCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAA 16399 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || || || ||||| ||||| | ||| || || || || Sbjct 16400 AGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGG 16459 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||||||||| || || |||| | ||||| || | || ||| Sbjct 16460 ATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACT 16519 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| || | |||||||| ||||| || || || || |||||||| | |||| ||| Sbjct 16520 TCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCATACCTCCGCGGAGA 16579 >seq713 Length=327371 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||||||||| || ||||||||||||| | |||||| |||| || Sbjct 311347 ACCAAGTGAAGCGTAGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCCTCA 311288 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 | |||||| || ||||| ||||||||||| ||||| || ||||| ||| Sbjct 311287 AGTTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATCCCT 311240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 |||||||||||||| |||||| ||| ||| |||| | ||||| || | |||||| || Sbjct 311041 CCTTCTTTATCTTGTATTTTTGCTTTCACATTTTCAATCGTGTCGGAGGCTTCCACCTCC 310982 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | |||| || || || ||||||||||| || |||||||||||| Sbjct 310981 AATGTGATTGTCTTCCCAGTTAAAGTTTTGACGAATATCTGCATG 310937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396256555524711