Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq857 107 4e-18
seq3919 84.2 4e-11
>seq857
Length=317079
Score = 107 bits (118), Expect = 4e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548
|||||| | |||||| || ||||| |||| || || || || || ||||||| |||||
Sbjct 82644 CTTGAGTATCTTCACCTTGTCCTCGAGCCTCGATATCCGCTCGAGCTTGCGCCTTCGGCA 82703
Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608
|||| ||| |||| ||||||||| | | ||| || || ||| || || ||||||
Sbjct 82704 CTTGGAGGCGGCCACGCGGTTCCGTTGCCGCTTTCGCTCGAGCTTTATTCGCTCCTGGCT 82763
Query 241609 CTCCATGTCGATCGGAGAC 241627
|||||||||||||||||||
Sbjct 82764 CTCCATGTCGATCGGAGAC 82782
>seq3919
Length=163912
Score = 84.2 bits (92), Expect = 4e-11
Identities = 132/188 (70%), Gaps = 6/188 (3%)
Strand=Plus/Plus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
||||||| | |||||| ||||| |||| ||||| ||||| | || | || ||||
Sbjct 142215 TCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTTTG 142274
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274
|||||||| || | |||||| ||| ||||||||| || || ||||| || || ||
Sbjct 142275 AGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGGCA 142334
Query 48275 GTGAGCCTCTCTCCGAA---AGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCT 48331
|| | ||| ||||| | | || |||| | |||||| |||||||||| |
Sbjct 142335 ACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTT---ATCCAGTTCAGCGCCCAGTTT 142391
Query 48332 GCCTTCTT 48339
||||||||
Sbjct 142392 GCCTTCTT 142399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931480133464320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |