Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq857 107 4e-18 seq3919 84.2 4e-11 >seq857 Length=317079 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||| | |||||| || ||||| |||| || || || || || ||||||| ||||| Sbjct 82644 CTTGAGTATCTTCACCTTGTCCTCGAGCCTCGATATCCGCTCGAGCTTGCGCCTTCGGCA 82703 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| ||||||||| | | ||| || || ||| || || |||||| Sbjct 82704 CTTGGAGGCGGCCACGCGGTTCCGTTGCCGCTTTCGCTCGAGCTTTATTCGCTCCTGGCT 82763 Query 241609 CTCCATGTCGATCGGAGAC 241627 ||||||||||||||||||| Sbjct 82764 CTCCATGTCGATCGGAGAC 82782 >seq3919 Length=163912 Score = 84.2 bits (92), Expect = 4e-11 Identities = 132/188 (70%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||||| | |||||| ||||| |||| ||||| ||||| | || | || |||| Sbjct 142215 TCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTTTG 142274 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || | |||||| ||| ||||||||| || || ||||| || || || Sbjct 142275 AGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGGCA 142334 Query 48275 GTGAGCCTCTCTCCGAA---AGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCT 48331 || | ||| ||||| | | || |||| | |||||| |||||||||| | Sbjct 142335 ACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTT---ATCCAGTTCAGCGCCCAGTTT 142391 Query 48332 GCCTTCTT 48339 |||||||| Sbjct 142392 GCCTTCTT 142399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931480133464320