Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3846 93.3 4e-14 >seq3846 Length=171336 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || ||||| || |||||||| ||| ||| || |||| Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||| ||| |||||||||||| | || ||| || Sbjct 16734 GACACGATTGAAAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAG 16675 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || ||||| | || ||| ||| | ||||||||||| Sbjct 16674 CAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAAC 16615 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || ||||||||||| || |||| Sbjct 16614 ATCCAGAAGGAATCTACTCTTCATCTGGT 16586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 |||| ||||| || ||||| || || || ||||| || ||||| ||| |||| ||| Sbjct 17027 TAAACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAG 16968 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | || || ||| | | || | ||| || || |||||||||||| | || || Sbjct 16967 CATCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAG 16908 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 | || |||||| | |||||||| || ||||| | |||||| || | |||||| Sbjct 16907 ACCAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATT 16848 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCA 28756 ||||||| ||||| ||||| || || || Sbjct 16847 ATAACATCCAAAAGGAATCCACCCTCCA 16820 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||||||||| || || || || || || || |||| Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| |||||||||||| | || ||| || Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| || |||||| | |||||| ||| | | || || ||| Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || |||||| | || | | | ||||||||||| Sbjct 15702 ATCCAAAAAGAATCCACCCTGCACCTTGTCCTTCGGCTGCGAGGAGGGAT 15653 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || |||||||||||| ||| || | || Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || ||||||| |||||||| || | || ||| ||| Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| |||| |||||||| || || || | |||||| ||| || | || || ||| Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || | || |||| ||||| | || ||||| || Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGGTAT 15425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425381349959217