Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4302 145 9e-30 >seq4302 Length=777177 Score = 145 bits (160), Expect = 9e-30 Identities = 329/486 (68%), Gaps = 14/486 (3%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || ||||||||||| |||||||| || |||||||| || |||||||| ||| Sbjct 159336 ACCCCAATTGGCCCTACGCCAGGTCCTCCACCGCCGTGTGGAATGCAAAATGTCTTGTGT 159277 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||||| ||| | || || || || |||| ||| | || || ||||||||| Sbjct 159276 AAATTTAAATGTGAAACGTCGCTTCCGTAATCACCAGGTCTGCACAGTCCAACCTGTGCA 159217 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| || |||||||| || ||| || || || || | || || Sbjct 159216 TTCATGTTAGCTCCATCAAGGTATACCTGCCCTCCACCGTTGTGGACCATTTCGCAAATA 159157 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA- 138421 | ||| || ||| || ||||||| || |||||||| || ||||| | ||| || Sbjct 159156 TCGGCAATGGTTTCTTCGAAGACACCATTGGTGGATGGATAAGTGATCATTAGACAGGAT 159097 Query 138422 GAGTTCA-AATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCAT 138480 | |||| |||||| || | |||| || || || ||||| | |||| Sbjct 159096 AAATTCACTTTGTATTTATCTATCATTTC--CTGTAAATGAACTATGTCGACAGAACCAT 159039 Query 138481 CATCATCACACTTGA--CACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATT 138538 | | || ||| ||| | || |||| ||| |||||||| ||| ||| ||||| Sbjct 159038 C-TTTTCTCACATGAATCGGCT-CAACACGCATCCCTGCCATTTGTGCTGAAGCTGGATT 158981 Query 138539 AGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTT---TATCATCTCCTGATCC 138595 || || ||||| || ||||||||||||| || | || | |||| | | ||| | Sbjct 158980 TGTGCCGTGTGCAGAAACTGGTATCAGACAAACTTGCCTGTGGGCATCACCCCGCGATTC 158921 Query 138596 TTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGG 138655 |||| | | ||||| ||| || |||||| || ||||| || | || ||| || Sbjct 158920 GTGATAACA---CTGGATAGCTCTCAATCCTGCGTATTCACCTTGCGCACCACTGTTTGG 158864 Query 138656 TTGTAA 138661 ||| || Sbjct 158863 TTGAAA 158858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 || ||||| ||||||| | | ||||| || ||||| || ||||| || |||||||| Sbjct 158055 CCGTGATAAACTGCATACATAGCGGACATGTTGGCGAGTAGAGCTTGAGCAGTGCAGATA 157996 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTA 139383 ||||| || || ||||||||||| || || || ||||| ||||| ||||||| Sbjct 157995 TTACTTGTAGCCTTGTCTCTTCTGATGTGTTGTTCTCTGGTTTGAAGTGCTA 157944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578965664877960