Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4439 113 6e-20 >seq4439 Length=56266 Score = 113 bits (124), Expect = 6e-20 Identities = 167/236 (71%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 47843 CCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA 47902 |||||||||||||| | |||||||||||||| || | | ||| | || || || | | Sbjct 51383 CCTCGACATAATCTTTAGCATGTCCCCAGTCTCGTTGGGAATCCAAGTTCCCGAGTTCCA 51324 Query 47903 AACAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGC------TCTTGTAATCTTACGAG 47956 | |||||| ||| ||| | || || ||| ||| ||||| || || | Sbjct 51323 AGACTTCTTGCAAACC--CAG----TTCTATTTTTGCAGCAGATCTGGTAATTTTTCGCG 51270 Query 47957 TTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCAT 48016 | |||||| |||| || | ||| ||| ||| |||||||| | || ||| ||||||||| Sbjct 51269 TCACAAAATTTTCCCCTCTTCTCGGACTTTCGTGATTAAATAATATTCCATTACAGGCAT 51210 Query 48017 ACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072 |||| ||||| | ||| || || || | ||||||||| | ||||| | |||||| Sbjct 51209 ACATGCCGTAAGCTTCTCGGTAATTTATCACTATCCAGAATCCATACATCTTTGCA 51154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665456774610360