Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3846 127 4e-24 >seq3846 Length=171336 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | | ||| || || ||||| | || | ||| || ||||||||||||| Sbjct 15197 ATACCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCG 15256 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | |||||||| ||||||||||||||||| || || || Sbjct 15257 GAAAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGT 15316 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| ||||| | ||| | || || ||||| || | ||| Sbjct 15317 GGGATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCG 15376 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || || || || || || ||||| ||||| |||||||| Sbjct 15377 ACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||||||| | |||| ||| || ||| || ||||| || | || | | Sbjct 14984 CGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCA 15043 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| || || || ||||| ||||| || || ||||| ||||||||||| Sbjct 15044 TCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTG 15103 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | |||| ||| || || || | |||||| || | || ||| Sbjct 15104 TCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATA 15163 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||||| ||||| || ||||| Sbjct 15164 GTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||||||| | |||| || || || ||||| ||||| | || | | Sbjct 16580 CGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCA 16639 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||||| ||||||||||| || || || || ||||| ||||| Sbjct 16640 TCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTG 16699 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | |||| ||| || || |||| ||||||||| || || || Sbjct 16700 TCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATG 16759 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || |||| || || || || || ||||| Sbjct 16760 GTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899603535789360