Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 109 8e-19
>seq3846
Length=171336
Score = 109 bits (120), Expect = 8e-19
Identities = 139/190 (73%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || | ||||| ||||| ||||| || |||||||| | ||
Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| ||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| || |||||||| |||||| |||| || || || || ||
Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475
Query 156003 ATATCCAAAG 156012
|| || ||||
Sbjct 15474 AT-TCAAAAG 15466
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || || || ||||| ||||||||||| | ||||| || | |||
Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||||||| ||||| ||||| || || || || || ||||| ||
Sbjct 16506 GACACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 16447
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | |||||| || ||||| || ||| | | || | || ||||| ||
Sbjct 16446 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAAC 16387
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
|| ||||| | || ||||||
Sbjct 16386 ATCCAGAAAGAATCAACTCTTCAT 16363
Score = 98.7 bits (108), Expect = 1e-15
Identities = 154/217 (71%), Gaps = 5/217 (2%)
Strand=Plus/Minus
Query 155818 ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876
||||| ||||| || ||| | || || ||||| || || || || || | ||||| |||
Sbjct 17028 ATAAACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAA 16969
Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936
| ||||||| || ||| ||||| || || || || ||||| || || || |||
Sbjct 16968 GCATCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCA 16909
Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996
|| || || |||||||| | ||| || || |||||||||||| | | || | || |||
Sbjct 16908 GACCAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGAT 16849
Query 155997 TATAATATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
|||| | ||||||| || | || || ||| ||||
Sbjct 16848 TATA--ACATCCAAAAGGAATCCACCCTCCATCTAGT 16814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731830621786800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |