Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3846 118 2e-21 >seq3846 Length=171336 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | || | ||| | ||||| || || ||| |||||||| Sbjct 16565 ATACCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCG 16624 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||||| || ||||||||||||||||| || || ||| Sbjct 16625 GAAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGT 16684 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || || || ||| ||||| || | || || | || Sbjct 16685 GGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCA 16744 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| |||||||| || || | || |||||||| Sbjct 16745 ACTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | || || | |||| ||| | || | ||| ||| || |||||||| || Sbjct 15197 ATACCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGA-ATATTATAGTC 15255 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| |||| ||||| |||||||| ||||||||||| || || || Sbjct 15256 GGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGG 15315 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||| || || ||||| ||||| ||| || || ||| | ||| || | || Sbjct 15316 TGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTC 15375 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| || || ||||| | ||||| | ||| || ||||| Sbjct 15376 GACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | || | ||| || | |||||| || | || ||| || || || || || Sbjct 15425 ATACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGA-ATGTTGTAGTC 15483 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||||| |||| || | || || ||||||||||| | || |||||| || || Sbjct 15484 AGACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 15543 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||| ||||| ||||| |||||| || || | || || | || Sbjct 15544 TGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTC 15603 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||| ||||| | || || | ||| || ||||| Sbjct 15604 GACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | ||||||||||| || | ||||| ||||| || || Sbjct 16109 ATTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCC 16168 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || || | || || || || || || || | ||| ||||| || Sbjct 16169 GACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGA 16228 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| || || |||||||| |||| || || | || Sbjct 16229 GGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCG 16288 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| ||||||| || || | ||| || ||||| Sbjct 16289 ACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || | ||||| ||||| |||||| || || Sbjct 15881 ATCCCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCT 15940 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || ||| | || || | || || ||||||||||| || | ||| || || || Sbjct 15941 GATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 16000 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| ||||| |||||||| |||| || || | || Sbjct 16001 GGAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCA 16060 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||||||| ||||| | || |||| || || |||||| Sbjct 16061 ACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || || || | || || |||| || | |||||| ||||||||| Sbjct 15692 TCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAG 15751 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || || | ||| || || || || ||||| ||||| || || |||||| || ||||| Sbjct 15752 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTC 15811 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 |||| || || | || || || | ||| || || || |||||||||||||| | | Sbjct 15812 TCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACA 15871 Query 192526 AATATCTGCAT 192536 || || ||||| Sbjct 15872 AAAATTTGCAT 15882 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | || || | || | ||| | ||||| ||| || || || || || || Sbjct 14972 CCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAA 15031 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| ||||| || || || ||||| ||||| || || || || Sbjct 15032 AGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGA 15091 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| ||||| ||||| || ||||| || | || |||| || || Sbjct 15092 ATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACC 15151 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || ||||| || || || ||||| | ||| |||||||| Sbjct 15152 TCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984422948461050