Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 127 4e-24
>seq3846
Length=171336
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||||| | |||| ||| | || | ||| || ||||||||| ||
Sbjct 15197 ATACCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCG 15256
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | || |||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 15257 GAAAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGT 15316
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| || || ||||| ||||| ||| || || ||| ||||| || | ||
Sbjct 15317 GGGATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCG 15376
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | |||||| || || ||||| | ||||| | || || |||||
Sbjct 15377 ACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| |||||||| ||||| | ||||||||||| || | ||||| |||||| || ||
Sbjct 16109 ATTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCC 16168
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| |||| ||| |||| || | || || || || ||||| || | ||| || || ||
Sbjct 16169 GACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGA 16228
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||| ||||| || || |||||||| ||||| || || | ||
Sbjct 16229 GGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCG 16288
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || |||||||| ||||||| || || | || || |||||
Sbjct 16289 ACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | || || | || | ||| | ||||| || || || ||||||||
Sbjct 16565 ATACCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCG 16624
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || | || || | ||||| || ||||| ||||||||||| ||||| |||
Sbjct 16625 GAAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGT 16684
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||| ||||| || || || || ||| ||||| || || || || | ||
Sbjct 16685 GGGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCA 16744
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| || || |||||||| |||||||| || || | ||| ||||||||
Sbjct 16745 ACTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | || | ||| || | |||||| || | || || ||| || || ||
Sbjct 15425 ATACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCA 15484
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | |||| | || || | || || |||||||| || | || ||||||||| |||
Sbjct 15485 GACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGT 15544
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| ||||| |||||| || || || || || | ||
Sbjct 15545 GGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCG 15604
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | ||||||||||| ||||| | || || | || || |||||
Sbjct 15605 ACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | || || | || | ||| | ||||| ||| || ||| || || |||||
Sbjct 14972 CCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAA 15031
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
| | || | || |||| ||||| || || || ||||| ||||| ||||| || ||
Sbjct 15032 AGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGA 15091
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
||||||||||| ||||| ||||| || ||||| || || || |||| || ||
Sbjct 15092 ATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACC 15151
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || ||||| || || || ||||| | || ||||||||
Sbjct 15152 TCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 91.5 bits (100), Expect = 3e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || | |||||| |||||||| || || | ||| ||||| || || ||||| |||||
Sbjct 15728 TCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTG 15787
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || |||||| || ||||| ||||| || || | || || || | ||| ||
Sbjct 15788 TCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATT 15847
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||||||||| | || || |||||
Sbjct 15848 GTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905084825873400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |