Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4218 114 4e-20
seq558 89.7 2e-12
>seq4218
Length=88320
Score = 114 bits (126), Expect = 4e-20
Identities = 191/273 (70%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633
||||||| ||||| ||||| |||||||| || |||||| || ||||| || || ||
Sbjct 50936 TTCCATAGCTTTGATCAAACGTCGCTGAATGTATCCAGTTTCAGCAGTTTTGACGGCGGT 50995
Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693
|||||| ||||| | | ||| |||||||| ||||| | | |||| ||| || ||
Sbjct 50996 ATCAATGAGACCCTCTCTACCTCCCATAGCGTGGAAATAGAACTCTGATGGTGTGAGACC 51055
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750
||| | ||| | |||||||| || | | || || || ||||||| ||| |
Sbjct 51056 GGCAAGGTATGAGTTTTCAACGAACCCTCTTGATTCAGGACCGTAATCGTCT---TTGAT 51112
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| ||||||||||| | || | ||| |||| || | ||| || |||||||| ||
Sbjct 51113 GAAATGTGGCAGGGTGCGTTTGCGGAATCCGAATGGTATTCTCTTACCCTCAACGTTTTG 51172
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||| || | |||| ||| | ||| ||||| ||
Sbjct 51173 CTGACCGACACACGCAATGACCTGAGAAATGTT 51205
>seq558
Length=345963
Score = 89.7 bits (98), Expect = 2e-12
Identities = 89/115 (77%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875
||||||| ||||| |||||||| | || | || | |||| || ||||||||||||
Sbjct 98122 ATTTCTTTTATACGAGGAACACCCTGTGTAATATT---CATGGAGGCGACACCAGCAAAG 98066
Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAA 301930
|||||||| || | || | |||||| ||| ||||||||||||||||| ||||
Sbjct 98065 TGGAAAGTTTTTAATGTCATTTGAGTGCCTGGTTCACCAATACTTTGTGCAGCAA 98011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471732306790251
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |