Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4218 114 4e-20 seq558 89.7 2e-12 >seq4218 Length=88320 Score = 114 bits (126), Expect = 4e-20 Identities = 191/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||||| ||||| |||||||| || |||||| || ||||| || || || Sbjct 50936 TTCCATAGCTTTGATCAAACGTCGCTGAATGTATCCAGTTTCAGCAGTTTTGACGGCGGT 50995 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 |||||| ||||| | | ||| |||||||| ||||| | | |||| ||| || || Sbjct 50996 ATCAATGAGACCCTCTCTACCTCCCATAGCGTGGAAATAGAACTCTGATGGTGTGAGACC 51055 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 ||| | ||| | |||||||| || | | || || || ||||||| ||| | Sbjct 51056 GGCAAGGTATGAGTTTTCAACGAACCCTCTTGATTCAGGACCGTAATCGTCT---TTGAT 51112 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || ||||||||||| | || | ||| |||| || | ||| || |||||||| || Sbjct 51113 GAAATGTGGCAGGGTGCGTTTGCGGAATCCGAATGGTATTCTCTTACCCTCAACGTTTTG 51172 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || | |||| ||| | ||| ||||| || Sbjct 51173 CTGACCGACACACGCAATGACCTGAGAAATGTT 51205 >seq558 Length=345963 Score = 89.7 bits (98), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| ||||| |||||||| | || | || | |||| || |||||||||||| Sbjct 98122 ATTTCTTTTATACGAGGAACACCCTGTGTAATATT---CATGGAGGCGACACCAGCAAAG 98066 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAA 301930 |||||||| || | || | |||||| ||| ||||||||||||||||| |||| Sbjct 98065 TGGAAAGTTTTTAATGTCATTTGAGTGCCTGGTTCACCAATACTTTGTGCAGCAA 98011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471732306790251