Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11 205 8e-48 seq3846 113 4e-20 >seq11 Length=54362 Score = 205 bits (226), Expect = 8e-48 Identities = 317/453 (70%), Gaps = 0/453 (0%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || || |||| |||||| || ||||| || || ||| | || | |||| | Sbjct 51194 GGTGGATTCTTCAATATGAATGTATTGAGTTTGTGGTTGAATTCAAGGAGGTTATGATGA 51253 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 || || |||||||| |||||| | || | |||||| ||| | | || ||||| Sbjct 51254 CCACAGGCTTTGCATCCCTGAGAAATCGTTCCCTTTTTTGCGCTGATAAGCAGTTCAGTT 51313 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| |||||||| | |||||||| || | || | |||||| ||||| || || || Sbjct 51314 TCCGGATTGTCACAAGCAGGACACAAAACGTATTTTCTGATGAATCCATCGAGAAGATCT 51373 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACC 34443 || | || | || || || ||||| |||||||||| ||| ||||| |||| | Sbjct 51374 TGAAGTTTGGTTGCATCATGAGATCCGTTAACGATGAATCTTTCATTTTTAAAATCAAAT 51433 Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503 || || || || || || ||||| || ||||||||||| || || ||| || | || Sbjct 51434 TGAGTCTGAGCTCCAAGTTCGCATCCAAAGTACTTTGTTGGATACGTGGGGGGTCTCCCG 51493 Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 | || ||||||| ||| |||||||||||| ||||| || || || ||||| || || Sbjct 51494 ATGGCTTTGGCGACTTCTATCATGTTGACGATTACAGTTTTTATTCCATTGCCTTTGCCC 51553 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 || |||||||| || || |||||||||||||| || || || || ||| || Sbjct 51554 TCTACCTTGGCTTGAATCCGAGGCATTTTGTAGCGATAAAAGGCATCGCTAACAGCCCGA 51613 Query 34624 TTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 || ||||| | | ||||||| || ||||| || Sbjct 51614 TTGACGTTTAGACTCCCCATGGTAACTGGTATT 51646 >seq3846 Length=171336 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || ||||||||||||||| | ||| ||| | | Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| || || |||||||||||| | || || ||| Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| || | ||| || || ||||| || |||| |||| || | || |||||| Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || || || |||| ||||| ||||| || || Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGG 15428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || |||| ||||||||||| || | ||| ||| | | Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | ||||| |||||| |||||||| || | || ||||| Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| || || || ||||| || || | | || || |||| ||||| Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| || || || | || | ||||| |||| |||| Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGAA 16110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412818842493839