Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq36 105 1e-16 seq3334 86.0 1e-10 >seq36 Length=400867 Score = 105 bits (116), Expect = 1e-16 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| || ||||||||||| ||| |||||| | || ||||| || | | Sbjct 78904 TGTATTTGGTGACAGCTTTGGTACCCTCGCTGACAGCGTGCTTAGCAAGTTCTCCAGGAA 78845 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| || || || || ||||| || | |||||| ||| ||||| Sbjct 78844 GCAGAAGGCGAACAGCAGTTTGAATCTCCCGAGATGTGATCGTCGAGCGTTTGTTGTAAT 78785 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | |||| | | ||||| |||| |||||||||||||| ||||| Sbjct 78784 GAGCTAGACGAGACGATTCGGCGGCAATGCGTTCGAAAATGTCGTTGACAAAGCTGTTCA 78725 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| | || || || ||| ||||| |||||||| || || |||| Sbjct 78724 TGATGCTCATAGCTTTGCTCGAAATACCAGTGTCTGGGTGGACCTGCTTCAGGACTTTGT 78665 Query 1485710 A 1485710 | Sbjct 78664 A 78664 >seq3334 Length=939761 Score = 86.0 bits (94), Expect = 1e-10 Identities = 166/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| ||||||||||| || ||| |||||| |||| ||||| || | | Sbjct 627256 TGTATTTGGTGACCGCCTTGGTACCTTCACTGACAGCGTGCTTGGCGAGTTCTCCAGGAA 627197 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | || || || || ||||| || | || || ||| ||||| ||| Sbjct 627196 GTAGAAGTCTGACAGCAGTTTGAATCTCCCGAGAAGTTATTGTCGAGCGTTTGTTGTAGT 627137 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || | |||| | ||||| |||| ||||||||||| || || Sbjct 627136 GAGCG--AGACGTGATGATTCGGCAGCAATGCGCTCGAAAATGTCGTTGACGAAGCTATT 627079 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | |||| | || || || ||||||||| |||||||| | || || Sbjct 627078 CATGATGCTCATGGCTTTGCTTGAAATACCAGTGTCGGGGTGGACCTGCTTCAAAACTTT 627019 Query 1485708 GTA 1485710 ||| Sbjct 627018 GTA 627016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915765267860597