Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq36 105 1e-16
seq3334 86.0 1e-10
>seq36
Length=400867
Score = 105 bits (116), Expect = 1e-16
Identities = 168/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| |||||||| || ||||||||||| ||| |||||| | || ||||| || | |
Sbjct 78904 TGTATTTGGTGACAGCTTTGGTACCCTCGCTGACAGCGTGCTTAGCAAGTTCTCCAGGAA 78845
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||| || || || || ||||| || | |||||| ||| |||||
Sbjct 78844 GCAGAAGGCGAACAGCAGTTTGAATCTCCCGAGATGTGATCGTCGAGCGTTTGTTGTAAT 78785
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || || | |||| | | ||||| |||| |||||||||||||| |||||
Sbjct 78784 GAGCTAGACGAGACGATTCGGCGGCAATGCGTTCGAAAATGTCGTTGACAAAGCTGTTCA 78725
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | |||| | || || || ||| ||||| |||||||| || || ||||
Sbjct 78724 TGATGCTCATAGCTTTGCTCGAAATACCAGTGTCTGGGTGGACCTGCTTCAGGACTTTGT 78665
Query 1485710 A 1485710
|
Sbjct 78664 A 78664
>seq3334
Length=939761
Score = 86.0 bits (94), Expect = 1e-10
Identities = 166/243 (68%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| |||||||| ||||||||||| || ||| |||||| |||| ||||| || | |
Sbjct 627256 TGTATTTGGTGACCGCCTTGGTACCTTCACTGACAGCGTGCTTGGCGAGTTCTCCAGGAA 627197
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587
| || | || || || || ||||| || | || || ||| ||||| |||
Sbjct 627196 GTAGAAGTCTGACAGCAGTTTGAATCTCCCGAGAAGTTATTGTCGAGCGTTTGTTGTAGT 627137
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || || | |||| | ||||| |||| ||||||||||| || ||
Sbjct 627136 GAGCG--AGACGTGATGATTCGGCAGCAATGCGCTCGAAAATGTCGTTGACGAAGCTATT 627079
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
|||||| ||| | |||| | || || || ||||||||| |||||||| | || ||
Sbjct 627078 CATGATGCTCATGGCTTTGCTTGAAATACCAGTGTCGGGGTGGACCTGCTTCAAAACTTT 627019
Query 1485708 GTA 1485710
|||
Sbjct 627018 GTA 627016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915765267860597
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |