Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq4480 122 6e-23
seq3846 122 6e-23
seq2212 122 6e-23
>seq4480
Length=409792
Score = 122 bits (134), Expect = 6e-23
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| || ||||| || ||||| ||||
Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
| ||||| ||||||||| | || | ||||| ||||| | ||||| ||||| |
Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | || ||||| || |||| || |||||||| ||||| ||||||||||| |
Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684
Query 34968 AGATCTGCAT 34977
||||||||||
Sbjct 402683 AGATCTGCAT 402674
>seq3846
Length=171336
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || |||| |||| |||||| ||||| |||||||| || || | ||| ||||
Sbjct 15215 AGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCT 15274
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || ||||| || || || | || ||||||||| | || | |||||||||||
Sbjct 15275 TCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 15334
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| |||||| ||| ||| |||| | ||| |||||||| || | || || |||
Sbjct 15335 TGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTC 15394
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || || || ||||| || |||||
Sbjct 15395 TTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|||||||| |||| || |||||||| |||||||| || || || |||| ||||
Sbjct 16583 AGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCC 16642
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || |||||||| ||||| | || ||||||||| | || | ||||| |||||
Sbjct 16643 TCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCC 16702
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||| || | | |||| ||| ||||| || |||| ||| |||||
Sbjct 16703 TGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTT 16762
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || | |||||| || |||||||||||
Sbjct 16763 TTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| |||| || ||||||||||||||| ||||| || ||| | ||| ||||
Sbjct 14987 AGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCT 15046
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || || ||||| || | | ||||||||| | || | || || |||||
Sbjct 15047 TCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCT 15106
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| ||||| | | || | ||| ||||| || || | ||| || ||
Sbjct 15107 TGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTT 15166
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || | ||| || ||||||||||||||
Sbjct 15167 TTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| || || ||||| ||||| || || || || | || ||||
Sbjct 16355 AGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCC 16414
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || || ||||| ||||||| | ||||||||| | || | |||||||||||
Sbjct 16415 TCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 16474
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| || ||| | | || | || ||||| || |||| ||| || ||
Sbjct 16475 TGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTT 16534
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || | |||||| || |||||||||||
Sbjct 16535 TTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| || || ||||| || || ||||| |||| | | || | ||
Sbjct 15899 AGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCT 15958
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||||| || ||||||||| | || | |||||||||||
Sbjct 15959 TCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCT 16018
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| || || | | || | || |||||| || || | || |||||
Sbjct 16019 TGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTT 16078
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| ||||| || || || |||||
Sbjct 16079 TTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
>seq2212
Length=252600
Score = 122 bits (134), Expect = 6e-23
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| || ||||| || ||||| ||||
Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
| ||||| ||||||||| | || | ||||| ||||| | ||||| ||||| |
Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | || ||||| || |||| || |||||||| ||||| ||||||||||| |
Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468
Query 34968 AGATCTGCAT 34977
||||||||||
Sbjct 250469 AGATCTGCAT 250478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325674846489737
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |