Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq47 378 5e-99 seq1768 288 7e-72 seq1846 123 2e-22 seq2824 100 2e-15 >seq47 Length=398807 Score = 378 bits (418), Expect = 5e-99 Identities = 888/1320 (67%), Gaps = 18/1320 (1%) Strand=Plus/Plus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 |||||||||||| || || || ||| || ||||| ||| | |||| ||||| || Sbjct 138340 ATTAGTAATAGTGATCTTATTTTCTTTACCAGTCGATTTGTCAACAGCAGATACATTCAG 138399 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||| || || | ||||| || |||||||||||||| || |||| | || || Sbjct 138400 GATACCATTAGCGTCGATGTCAAAAGTTACTTCAATTTGAGGAACGCCTCGGGGTGCCGG 138459 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||| ||||| | | ||| |||| || |||||| || ||||| | | ||| || Sbjct 138460 TGGAATCCCGCTGAGCTCAAACTTTCCAAGTAGATTATTGTCCTTAGTCATTGCTCGCTC 138519 Query 281560 ACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 ||| ||| | | |||||| ||| || ||| |||||||| | ||| || || || | Sbjct 138520 ACCTTCGTAGACTTGGATGAGT-ACACCAGGCTGATTATCGGCATAGGTAGTGAACGTTT 138578 Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | | ||| ||||| |||||||| | | |||| ||||| | ||| |||| Sbjct 138579 GTGTCTGCTTAGTTGGAATGGTTGTGTTACGCTTGATAAGTGCAGTCATGACACCGCCAG 138638 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | ||||| | |||||||||||| ||||| ||||| | || | || | || | || | Sbjct 138639 CAGTTTCGATACCAAGAGAAAGGGGAGTAACATCTAAGAGAAGAAGGTCCTGCACTTCCT 138698 Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | | || | ||| ||||| || ||||| | ||| || || || || ||||||||| Sbjct 138699 C-TGACTTATCTCCATGGAGAATGGCAGCTTGGACAGCCGCTCCGTAAGCTACAGCTTCA 138757 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 281856 ||||| || | || || ||| |||| || |||||||| || | || |||| || | Sbjct 138758 TCAGGGTTGATAGATTTATTCAGTTCCTTGCCATTGAAGAAGTCCTGCAAGAGCTTCT-G 138816 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | |||||| ||||||| || || ||||| | ||||| || || | ||| || || || Sbjct 138817 AATCTTAGGGATACGAGTGGAGCCACCAACCAGAACAATGTCGTGAATCTGAGACTTGTC 138876 Query 281917 CAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975 || ||| | ||| | | || || || || ||||||||| | | | || | ||||| Sbjct 138877 CATTTTAGCATCACGAAGGGAC-TTCTCCACAGGTTCAAGAGTACCACGGAAGAGGTCTG 138935 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 282033 ||| | |||||| ||| |||||| || || || | || || |||||||| || || Sbjct 138936 CACACAATTCTTCAAATCGAGCTCTTGT--GATGGAAGTGTAGAAGTCAATTCCCTCAAA 138993 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 | |||||||| ||||| | | ||| || || || ||||||| || || || | ||| Sbjct 138994 GAGAGAATCAATCTCAATGCTGGCTTGGGTGGATGAGGATAGTGTGCGCTTCGCTCTTTC 139053 Query 282094 ACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTTATAT 282151 ||| ||||| | |||| |||| || | |||| | || ||| |||| | || ||| Sbjct 139054 ACACGCTGTGCGAAGTCGACGTAGAGCACGTTTGTT--CTGGGTCAGATCTTTCTTGTAT 139111 Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 |||| |||||| |||| ||| | | || | ||||| ||||||||||| || || Sbjct 139112 TTTCGCTTGAACTCTTGGACAAAGTGGTTCACCATGCGATTGTCAAAATCTTCTCCACCA 139171 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | ||| | || | || | | || | ||| | |||||| || | | | | Sbjct 139172 AGGTGAGTGTCACCAGCAGTCGACTTGACCTCGAAGATTCCATCCTCGATGGTAAGGATG 139231 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331 | |||||| || || || || | |||||||| || ||||| |||| | Sbjct 139232 GATACATCAAAAGTACCGCCGCCAAGGTCAAAAATGAGAACATTACGTTCTCCAACAGCT 139291 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||| ||||| |||| ||||| || || || ||||| ||||||| || || Sbjct 139292 TTCTTGTCAAGTCCATAAGCAATGGCAGCTGCTGTGGGCTCATTGATAATTCGCAGTACG 139351 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| | || | || | ||||| || || || | || || ||||| ||||| Sbjct 139352 TTCAGACCTGAGATGGTACCAGAGTCTTTGGTTGCCTGACGCTGCGAGTCGTTGAAATAG 139411 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || |||||||| || ||||||| || || ||| |||| || || || |||| Sbjct 139412 GCGGGAACAGTGATCACGGCATTGGTGACGGTTTTACCAAGGTATGCCTCGGCAGTTTCC 139471 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTGGATTCATT 282570 ||||| ||| | | |||||| | || |||||| ||| | | ||| | || Sbjct 139472 TTCATCTTAACCAGGACCATTGAGCTCACTTCTTCTGG-GAAGAAAGTCTTCGTCTCTCC 139530 Query 282571 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATA 282630 || ||| ||||| | | ||||| |||| || ||| ||| |||||||||| | Sbjct 139531 TTTGTATTGAACTTCGATTTTGGGTTTTCCACCATCACTAACAACGGTAAATGGCCAGTG 139590 Query 282631 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690 |||||| |||| ||||| | |||| | ||| | ||| || | || ||| ||||| Sbjct 139591 TTTCATGTCTGCCTGAACTGTGAGGTCCTCAAAGCGGCGACCGATCAGTCTTTTGGCATC 139650 >seq1768 Length=267506 Score = 288 bits (318), Expect = 7e-72 Identities = 952/1463 (65%), Gaps = 33/1463 (2%) Strand=Plus/Plus Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497 ||||| ||||| || |||| |||||| || || || || || || || || | |||| Sbjct 225940 AGAATTCCATTAGCGTCCATATCAAAAGTCACCTCGATCTGCGGAACTCCGCGAGGAGCT 225999 Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557 |||| || || | | ||| | || || ||| || || || || | ||| Sbjct 226000 GGTGCAATTCCACTTAGCTCGAATTTACCAAGCAGATTGTTGTCCTTTGTCATAGCACGT 226059 Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 |||||||| |||| ||| || || ||| ||| |||||| || | || || ||||| | | Sbjct 226060 TCACCCTCAAAAACTTGAATCGTTACTCCAGGTTGATTGTCAGCGTACGTGGTAAAGA-T 226118 Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676 |||| | || ||||| || ||| | || | || || || |||||||||| || || Sbjct 226119 CTGGGTCTTCTTACAGGGGATTCGAGCATTACGTTCTATGATGTTGGTCATAACCCCGCC 226178 Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 281736 ||| || || | || ||||||||||| | ||| ||||| |||| | || |||||| | Sbjct 226179 AGCAGTCTCAATCCCCAGAGAAAGAGGGGCGACGTCAACCAGGAGGACATCTTGAAGGCT 226238 Query 281737 T----TCATCAGTT--TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 || | || | ||| ||||||||||| || | |||||| || || || || Sbjct 226239 GGAGGTCTTGCTTTCTTCTCCACTGAGAATAGCTGCCTGTACAGCAGCGCCGTAAGCTAC 226298 Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 281850 ||||| || ||||| | | ||| || | || |||||||| || || || || Sbjct 226299 TGCTTCGTCTGGATTGATGGAGAGATTGAGCTGCTTGCCATTGAAGAAGTTCTGCAGTAG 226358 Query 281851 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 ||| | ||| || ||||| | ||| || ||||||| ||||| || || | || | Sbjct 226359 GC-TCTGGATCTTGGGTATACGTGTTGAACCACCAACTAGAACAATATCTTGGAT-TGAG 226416 Query 281910 ATTTATC-CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 ||| | || |||| ||| | | | |||||||||| || || | ||||| ||| Sbjct 226417 CTTTTGCTCATCTTTGCATCAAGAAGAGCTTTTTCAACTGGCTCTAATGTCGCTCTGAAC 226476 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028 | |||| ||||||||| || || || || | || | || ||||||| || Sbjct 226477 AGATCTGCACAAAGTTCCTCAAAGCGTGCCCTTGAAATTCTAGTATAGAAATCAATGCCA 226536 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 || || | || || | ||| | || | | || ||| || || | |||||| || Sbjct 226537 TCAAAGAGAGCGTCGATTTCGAGGGTTGCCTCGGTACTAGAGGAAAGAGTACGTTTTGCT 226596 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATTGATTCAAATCTGTTTT 282147 |||||| ||| || | | | || | || ||| | ||| | | ||| | || Sbjct 226597 CGTTCAGCTGCAGTACGCAAACGGCGAATAGCACGTTGGTTATTCCTGAGATTCT-TCTT 226655 Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCA 282205 |||||||||| || |||| || | ||| | ||||| || ||||| ||||| Sbjct 226656 GTATTTTCTCTCAAATTCTTTTGCAAA--ATGCTCGACAAGCCGCGAGTCAAAGTCTTCC 226713 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT---CAAGA 282262 || ||||| | ||||| ||||| || | |||| | ||| || | ||| ||| Sbjct 226714 CCACCCAAATGAGTATCTCCTGCAGTTGACTTTACCTCGAATAGCGAACCTTGATCAATT 226773 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 |||| | | |||||| |||||||||||||| ||||||||| || || || |||| Sbjct 226774 GACAGGATCGACACATCAAAGGTTCCACCACCCAGATCAAAAATCAGAACGTTTCGTTCT 226833 Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 | | |||| || || || ||||| || | || ||||| || || || || |||||| Sbjct 226834 CCCTGTAGGTTCTTGTCTAGTCCATAAGCTAGGGCGGCAGCTGTAGGCTCGTTGATAATT 226893 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 ||||| || || | || || || |||| |||||||| || || || || || || ||| Sbjct 226894 CTCAAGACGTTGATGCCGGCTATGGTTCCCGCATCTTTGGTTGCCTGCCTCTGAGAGTCG 226953 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 || || || || || ||||||||||| || ||| | | | || ||| | |||| Sbjct 226954 TTGAAGTAGGCTGGGACAGTAATAACTGCGTCTTTGATCTTTTGTCCGAGGAAAGCCTCG 227013 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 ||||| | ||||||||| | | || |||||| |||| |||||| ||| | Sbjct 227014 GCTGTCTCCTTCATTTTAGTCAGAACCATTGAACTGATTTCTTCTGG-----GTTGAATC 227068 Query 282563 GATTCATTTTGATATGATACT-----TCAAAATATGGTTTATTACCAACATTAATAACTT 282617 | || | | | | | ||| || | | ||||| | | || ||| Sbjct 227069 GTTTTTTCTCGCCACAAAACTCCACCTCGATCTTGGGTTTTCCTGCCTCTCCAACAACGC 227128 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAATT 282676 || ||||||| || || || || | |||||| |||| ||| | || || Sbjct 227129 GGAAAGGCCAATGCTTGATGTCATTCTGGA-TCTTTGGATCATCGAAACGCCGGCCGATC 227187 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 || || || || || || | ||| || | || || | || | |||| ||||| || Sbjct 227188 AAGCGCTTCGCGTCGAACACAGTGTTCGCCGGGTTTAGGGCCACCTGATTCTTGGCAGCG 227247 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || || ||||| | || || || ||||||| ||||| || ||||| || || ||| Sbjct 227248 TCGCCGATCAGCCGCTCGGTATCCGTAAATGCCACATAGCTGGGTGTTGTTCGGTTTCCT 227307 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || ||||| || || ||||| ||||| || | ||||| || || || || | | || Sbjct 227308 TGGTCATTTGCGATTATTTCGACTTTTCCTTGCTGCCAAACTCCGACGCAGGAATACGTC 227367 Query 282857 GTTCCTAAATCAATACCAATAGC 282879 || || | ||||| || || || Sbjct 227368 GTACCAAGGTCAATTCCGATTGC 227390 >seq1846 Length=281985 Score = 123 bits (136), Expect = 2e-22 Identities = 174/241 (72%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| |||||||||||||| | || | || |||| |||| ||| | || Sbjct 58830 TCAAAGTCTTCACCTCCCAAATGGGTGTCACCGTTTGTAGACACAACTTCGAACACACCG 58771 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATC-AAAAATAAGTAC 282312 | |||| || ||| ||| | || ||| || |||||||||| ||| || | |||| || Sbjct 58770 TTGTCAATAGTCAAGAGACTGACGTCAAAAGTACCACCACCCAGATCGAATACTAAG-AC 58712 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 |||| | ||| | | || || |||||||| || |||| |||||||| ||||| || Sbjct 58711 ATTCTTCTCT---CCATCCTTCTTGTCAAGACCGTAAGCAATTGCAGCAGCCGTTGGCTC 58655 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 ||| || ||||||| |||||| ||||||| ||| |||| |||||||| || || ||| | Sbjct 58654 ATTTATGATTCTCATAACATTCAGACCAGAAATAGTTCCAGCATCTTTGGTTGCCTGTTT 58595 Query 282433 T 282433 | Sbjct 58594 T 58594 >seq2824 Length=230198 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||| | ||||| || ||||||||||| |||||||| || |||| ||| | ||| ||| Sbjct 23363 TTATCCATGCCATAAGCTAAAGCAGCAGCTGTTGGTTCGTTGATAACTCTGAGAACGTTA 23422 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || |||||| || ||||| ||||| ||||| || || ||||| || || || || Sbjct 23423 AGGCCGGCAATTTGCCCAGCATCCTTAGTTGCTTGCCTCTGAGAATCATTGAAGTAGGCC 23482 Query 282455 GGAACAGT 282462 ||||| || Sbjct 23483 GGAACCGT 23490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740408339814198