Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq47 378 5e-99
seq1768 288 7e-72
seq1846 123 2e-22
seq2824 100 2e-15
>seq47
Length=398807
Score = 378 bits (418), Expect = 5e-99
Identities = 888/1320 (67%), Gaps = 18/1320 (1%)
Strand=Plus/Plus
Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439
|||||||||||| || || || ||| || ||||| ||| | |||| ||||| ||
Sbjct 138340 ATTAGTAATAGTGATCTTATTTTCTTTACCAGTCGATTTGTCAACAGCAGATACATTCAG 138399
Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499
|||||||| || || | ||||| || |||||||||||||| || |||| | || ||
Sbjct 138400 GATACCATTAGCGTCGATGTCAAAAGTTACTTCAATTTGAGGAACGCCTCGGGGTGCCGG 138459
Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559
||| ||||| | | ||| |||| || |||||| || ||||| | | ||| ||
Sbjct 138460 TGGAATCCCGCTGAGCTCAAACTTTCCAAGTAGATTATTGTCCTTAGTCATTGCTCGCTC 138519
Query 281560 ACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618
||| ||| | | |||||| ||| || ||| |||||||| | ||| || || || |
Sbjct 138520 ACCTTCGTAGACTTGGATGAGT-ACACCAGGCTGATTATCGGCATAGGTAGTGAACGTTT 138578
Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678
| | ||| ||||| |||||||| | | |||| ||||| | ||| ||||
Sbjct 138579 GTGTCTGCTTAGTTGGAATGGTTGTGTTACGCTTGATAAGTGCAGTCATGACACCGCCAG 138638
Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738
| ||||| | |||||||||||| ||||| ||||| | || | || | || | || |
Sbjct 138639 CAGTTTCGATACCAAGAGAAAGGGGAGTAACATCTAAGAGAAGAAGGTCCTGCACTTCCT 138698
Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| | | || | ||| ||||| || ||||| | ||| || || || || |||||||||
Sbjct 138699 C-TGACTTATCTCCATGGAGAATGGCAGCTTGGACAGCCGCTCCGTAAGCTACAGCTTCA 138757
Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 281856
||||| || | || || ||| |||| || |||||||| || | || |||| || |
Sbjct 138758 TCAGGGTTGATAGATTTATTCAGTTCCTTGCCATTGAAGAAGTCCTGCAAGAGCTTCT-G 138816
Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916
| |||||| ||||||| || || ||||| | ||||| || || | ||| || || ||
Sbjct 138817 AATCTTAGGGATACGAGTGGAGCCACCAACCAGAACAATGTCGTGAATCTGAGACTTGTC 138876
Query 281917 CAGTTTTGAATC-CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975
|| ||| | ||| | | || || || || ||||||||| | | | || | |||||
Sbjct 138877 CATTTTAGCATCACGAAGGGAC-TTCTCCACAGGTTCAAGAGTACCACGGAAGAGGTCTG 138935
Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 282033
||| | |||||| ||| |||||| || || || | || || |||||||| || ||
Sbjct 138936 CACACAATTCTTCAAATCGAGCTCTTGT--GATGGAAGTGTAGAAGTCAATTCCCTCAAA 138993
Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093
| |||||||| ||||| | | ||| || || || ||||||| || || || | |||
Sbjct 138994 GAGAGAATCAATCTCAATGCTGGCTTGGGTGGATGAGGATAGTGTGCGCTTCGCTCTTTC 139053
Query 282094 ACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTTATAT 282151
||| ||||| | |||| |||| || | |||| | || ||| |||| | || |||
Sbjct 139054 ACACGCTGTGCGAAGTCGACGTAGAGCACGTTTGTT--CTGGGTCAGATCTTTCTTGTAT 139111
Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211
|||| |||||| |||| ||| | | || | ||||| ||||||||||| || ||
Sbjct 139112 TTTCGCTTGAACTCTTGGACAAAGTGGTTCACCATGCGATTGTCAAAATCTTCTCCACCA 139171
Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271
| | ||| | || | || | | || | ||| | |||||| || | | | |
Sbjct 139172 AGGTGAGTGTCACCAGCAGTCGACTTGACCTCGAAGATTCCATCCTCGATGGTAAGGATG 139231
Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331
| |||||| || || || || | |||||||| || ||||| |||| |
Sbjct 139232 GATACATCAAAAGTACCGCCGCCAAGGTCAAAAATGAGAACATTACGTTCTCCAACAGCT 139291
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || ||||| ||||| |||| ||||| || || || ||||| ||||||| || ||
Sbjct 139292 TTCTTGTCAAGTCCATAAGCAATGGCAGCTGCTGTGGGCTCATTGATAATTCGCAGTACG 139351
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||| | || | || | ||||| || || || | || || ||||| |||||
Sbjct 139352 TTCAGACCTGAGATGGTACCAGAGTCTTTGGTTGCCTGACGCTGCGAGTCGTTGAAATAG 139411
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
|| |||||||| || ||||||| || || ||| |||| || || || ||||
Sbjct 139412 GCGGGAACAGTGATCACGGCATTGGTGACGGTTTTACCAAGGTATGCCTCGGCAGTTTCC 139471
Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTGGATTCATT 282570
||||| ||| | | |||||| | || |||||| ||| | | ||| | ||
Sbjct 139472 TTCATCTTAACCAGGACCATTGAGCTCACTTCTTCTGG-GAAGAAAGTCTTCGTCTCTCC 139530
Query 282571 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATA 282630
|| ||| ||||| | | ||||| |||| || ||| ||| |||||||||| |
Sbjct 139531 TTTGTATTGAACTTCGATTTTGGGTTTTCCACCATCACTAACAACGGTAAATGGCCAGTG 139590
Query 282631 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690
|||||| |||| ||||| | |||| | ||| | ||| || | || ||| |||||
Sbjct 139591 TTTCATGTCTGCCTGAACTGTGAGGTCCTCAAAGCGGCGACCGATCAGTCTTTTGGCATC 139650
>seq1768
Length=267506
Score = 288 bits (318), Expect = 7e-72
Identities = 952/1463 (65%), Gaps = 33/1463 (2%)
Strand=Plus/Plus
Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497
||||| ||||| || |||| |||||| || || || || || || || || | ||||
Sbjct 225940 AGAATTCCATTAGCGTCCATATCAAAAGTCACCTCGATCTGCGGAACTCCGCGAGGAGCT 225999
Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557
|||| || || | | ||| | || || ||| || || || || | |||
Sbjct 226000 GGTGCAATTCCACTTAGCTCGAATTTACCAAGCAGATTGTTGTCCTTTGTCATAGCACGT 226059
Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617
|||||||| |||| ||| || || ||| ||| |||||| || | || || ||||| | |
Sbjct 226060 TCACCCTCAAAAACTTGAATCGTTACTCCAGGTTGATTGTCAGCGTACGTGGTAAAGA-T 226118
Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676
|||| | || ||||| || ||| | || | || || || |||||||||| || ||
Sbjct 226119 CTGGGTCTTCTTACAGGGGATTCGAGCATTACGTTCTATGATGTTGGTCATAACCCCGCC 226178
Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 281736
||| || || | || ||||||||||| | ||| ||||| |||| | || |||||| |
Sbjct 226179 AGCAGTCTCAATCCCCAGAGAAAGAGGGGCGACGTCAACCAGGAGGACATCTTGAAGGCT 226238
Query 281737 T----TCATCAGTT--TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790
|| | || | ||| ||||||||||| || | |||||| || || || ||
Sbjct 226239 GGAGGTCTTGCTTTCTTCTCCACTGAGAATAGCTGCCTGTACAGCAGCGCCGTAAGCTAC 226298
Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 281850
||||| || ||||| | | ||| || | || |||||||| || || || ||
Sbjct 226299 TGCTTCGTCTGGATTGATGGAGAGATTGAGCTGCTTGCCATTGAAGAAGTTCTGCAGTAG 226358
Query 281851 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909
||| | ||| || ||||| | ||| || ||||||| ||||| || || | || |
Sbjct 226359 GC-TCTGGATCTTGGGTATACGTGTTGAACCACCAACTAGAACAATATCTTGGAT-TGAG 226416
Query 281910 ATTTATC-CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968
||| | || |||| ||| | | | |||||||||| || || | ||||| |||
Sbjct 226417 CTTTTGCTCATCTTTGCATCAAGAAGAGCTTTTTCAACTGGCTCTAATGTCGCTCTGAAC 226476
Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028
| |||| ||||||||| || || || || | || | || ||||||| ||
Sbjct 226477 AGATCTGCACAAAGTTCCTCAAAGCGTGCCCTTGAAATTCTAGTATAGAAATCAATGCCA 226536
Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088
|| || | || || | ||| | || | | || ||| || || | |||||| ||
Sbjct 226537 TCAAAGAGAGCGTCGATTTCGAGGGTTGCCTCGGTACTAGAGGAAAGAGTACGTTTTGCT 226596
Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATTGATTCAAATCTGTTTT 282147
|||||| ||| || | | | || | || ||| | ||| | | ||| | ||
Sbjct 226597 CGTTCAGCTGCAGTACGCAAACGGCGAATAGCACGTTGGTTATTCCTGAGATTCT-TCTT 226655
Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCA 282205
|||||||||| || |||| || | ||| | ||||| || ||||| |||||
Sbjct 226656 GTATTTTCTCTCAAATTCTTTTGCAAA--ATGCTCGACAAGCCGCGAGTCAAAGTCTTCC 226713
Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT---CAAGA 282262
|| ||||| | ||||| ||||| || | |||| | ||| || | ||| |||
Sbjct 226714 CCACCCAAATGAGTATCTCCTGCAGTTGACTTTACCTCGAATAGCGAACCTTGATCAATT 226773
Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322
|||| | | |||||| |||||||||||||| ||||||||| || || || ||||
Sbjct 226774 GACAGGATCGACACATCAAAGGTTCCACCACCCAGATCAAAAATCAGAACGTTTCGTTCT 226833
Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382
| | |||| || || || ||||| || | || ||||| || || || || ||||||
Sbjct 226834 CCCTGTAGGTTCTTGTCTAGTCCATAAGCTAGGGCGGCAGCTGTAGGCTCGTTGATAATT 226893
Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442
||||| || || | || || || |||| |||||||| || || || || || || |||
Sbjct 226894 CTCAAGACGTTGATGCCGGCTATGGTTCCCGCATCTTTGGTTGCCTGCCTCTGAGAGTCG 226953
Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502
|| || || || || ||||||||||| || ||| | | | || ||| | ||||
Sbjct 226954 TTGAAGTAGGCTGGGACAGTAATAACTGCGTCTTTGATCTTTTGTCCGAGGAAAGCCTCG 227013
Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562
||||| | ||||||||| | | || |||||| |||| |||||| ||| |
Sbjct 227014 GCTGTCTCCTTCATTTTAGTCAGAACCATTGAACTGATTTCTTCTGG-----GTTGAATC 227068
Query 282563 GATTCATTTTGATATGATACT-----TCAAAATATGGTTTATTACCAACATTAATAACTT 282617
| || | | | | | ||| || | | ||||| | | || |||
Sbjct 227069 GTTTTTTCTCGCCACAAAACTCCACCTCGATCTTGGGTTTTCCTGCCTCTCCAACAACGC 227128
Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAATT 282676
|| ||||||| || || || || | |||||| |||| ||| | || ||
Sbjct 227129 GGAAAGGCCAATGCTTGATGTCATTCTGGA-TCTTTGGATCATCGAAACGCCGGCCGATC 227187
Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736
|| || || || || || | ||| || | || || | || | |||| ||||| ||
Sbjct 227188 AAGCGCTTCGCGTCGAACACAGTGTTCGCCGGGTTTAGGGCCACCTGATTCTTGGCAGCG 227247
Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796
|| || ||||| | || || || ||||||| ||||| || ||||| || || |||
Sbjct 227248 TCGCCGATCAGCCGCTCGGTATCCGTAAATGCCACATAGCTGGGTGTTGTTCGGTTTCCT 227307
Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856
|| ||||| || || ||||| ||||| || | ||||| || || || || | | ||
Sbjct 227308 TGGTCATTTGCGATTATTTCGACTTTTCCTTGCTGCCAAACTCCGACGCAGGAATACGTC 227367
Query 282857 GTTCCTAAATCAATACCAATAGC 282879
|| || | ||||| || || ||
Sbjct 227368 GTACCAAGGTCAATTCCGATTGC 227390
>seq1846
Length=281985
Score = 123 bits (136), Expect = 2e-22
Identities = 174/241 (72%), Gaps = 5/241 (2%)
Strand=Plus/Minus
Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253
||||| |||||||||||||| | || | || |||| |||| ||| | ||
Sbjct 58830 TCAAAGTCTTCACCTCCCAAATGGGTGTCACCGTTTGTAGACACAACTTCGAACACACCG 58771
Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATC-AAAAATAAGTAC 282312
| |||| || ||| ||| | || ||| || |||||||||| ||| || | |||| ||
Sbjct 58770 TTGTCAATAGTCAAGAGACTGACGTCAAAAGTACCACCACCCAGATCGAATACTAAG-AC 58712
Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372
|||| | ||| | | || || |||||||| || |||| |||||||| ||||| ||
Sbjct 58711 ATTCTTCTCT---CCATCCTTCTTGTCAAGACCGTAAGCAATTGCAGCAGCCGTTGGCTC 58655
Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432
||| || ||||||| |||||| ||||||| ||| |||| |||||||| || || ||| |
Sbjct 58654 ATTTATGATTCTCATAACATTCAGACCAGAAATAGTTCCAGCATCTTTGGTTGCCTGTTT 58595
Query 282433 T 282433
|
Sbjct 58594 T 58594
>seq2824
Length=230198
Score = 100 bits (110), Expect = 2e-15
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
||||| | ||||| || ||||||||||| |||||||| || |||| ||| | ||| |||
Sbjct 23363 TTATCCATGCCATAAGCTAAAGCAGCAGCTGTTGGTTCGTTGATAACTCTGAGAACGTTA 23422
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
|| || |||||| || ||||| ||||| ||||| || || ||||| || || || ||
Sbjct 23423 AGGCCGGCAATTTGCCCAGCATCCTTAGTTGCTTGCCTCTGAGAATCATTGAAGTAGGCC 23482
Query 282455 GGAACAGT 282462
||||| ||
Sbjct 23483 GGAACCGT 23490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740408339814198
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