Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3846 104 2e-17 seq4498 82.4 7e-11 >seq3846 Length=171336 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| |||||||| || | |||| |||||||||||||| ||| Sbjct 15686 GTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCA 15745 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||||| ||| ||||| || ||||| || || |||||||| |||||| || Sbjct 15746 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTC 15805 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || || || | ||| | ||||| || || |||||| Sbjct 15806 ACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTT 15865 Query 137395 TTTACGAATATTTGCAT 137411 || || || |||||||| Sbjct 15866 TTGACAAAAATTTGCAT 15882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| || | ||| || |||| ||||||||||| || || ||||| || Sbjct 15884 CCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGAT 15943 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || || || |||||| |||||| ||| ||||| || ||||| Sbjct 15944 AAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 16003 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| |||||| |||| | ||| | ||||| | || || ||| Sbjct 16004 ATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACT 16063 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| || | || || ||||| |||||||| Sbjct 16064 TCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||| | || ||||||||||| || ||||| || || || | |||||| Sbjct 16129 AACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTC 16188 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 || || || || || | |||| ||| |||||||| ||||| || || |||||||| Sbjct 16189 AAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 16248 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| ||| |||| | ||| | ||||| | || || ||||| | || | || || Sbjct 16249 AATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTT 16308 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 ||| || | || || || || ||||||||| || Sbjct 16309 GCCAGTTAGGGTCTTGACAAAGATTTGCATACCT 16342 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTC 137258 ||||| | ||| | || ||||| ||||| |||||||| || || || | || | || Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCA-TC 15501 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| || || || |||||| |||| || || || || || || || |||||||||||||| Sbjct 15502 TTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTC 15561 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 |||||| ||||| | || | ||||| | || || ||||| | || | || Sbjct 15562 TTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGT 15621 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || | || || || || |||||||| Sbjct 15622 TTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 >seq4498 Length=49303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC-GGGCGCGCAATATTGTAC 151335 || || |||||||| ||||||||||| || ||| ||| || |||| | |||||| || Sbjct 41937 TTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTG-AATATTCTAT 41995 Query 151336 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTTGC 151394 ||||| | || | ||| |||||||| || | | || | || |||||| ||||| Sbjct 41996 AATTTCAGTGCAAAGATTACTGCATTTGAT-TGTGCCCACGTTCTGTTGATTTGATTTGC 42054 Query 151395 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437 | ||||| || ||||| | |||||| |||||||| ||||| Sbjct 42055 GATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTC 42097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488516378943600