Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 104 2e-17
seq4498 82.4 7e-11
>seq3846
Length=171336
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
|| ||||||||||| |||||||| || | |||| |||||||||||||| |||
Sbjct 15686 GTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCA 15745
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| |||||| ||| ||||| || ||||| || || |||||||| |||||| ||
Sbjct 15746 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTC 15805
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | || | ||||| | | || || || | ||| | ||||| || || ||||||
Sbjct 15806 ACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTT 15865
Query 137395 TTTACGAATATTTGCAT 137411
|| || || ||||||||
Sbjct 15866 TTGACAAAAATTTGCAT 15882
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || |||| || | ||| || |||| ||||||||||| || || ||||| ||
Sbjct 15884 CCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGAT 15943
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | |||||| || || || |||||| |||||| ||| ||||| || |||||
Sbjct 15944 AAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 16003
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || || ||||| |||||| |||| | ||| | ||||| | || || |||
Sbjct 16004 ATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACT 16063
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | || ||||| || | || || ||||| ||||||||
Sbjct 16064 TCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261
||||||||| | || ||||||||||| || ||||| || || || | ||||||
Sbjct 16129 AACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTC 16188
Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321
|| || || || || | |||| ||| |||||||| ||||| || || ||||||||
Sbjct 16189 AAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 16248
Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381
||| ||| |||| | ||| | ||||| | || || ||||| | || | || ||
Sbjct 16249 AATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTT 16308
Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
||| || | || || || || ||||||||| ||
Sbjct 16309 GCCAGTTAGGGTCTTGACAAAGATTTGCATACCT 16342
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTC 137258
||||| | ||| | || ||||| ||||| |||||||| || || || | || | ||
Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCA-TC 15501
Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318
||| || || || |||||| |||| || || || || || || || ||||||||||||||
Sbjct 15502 TTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTC 15561
Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378
|||||| ||||| | || | ||||| | || || ||||| | || | ||
Sbjct 15562 TTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGT 15621
Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||||| || | || || || || ||||||||
Sbjct 15622 TTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
>seq4498
Length=49303
Score = 82.4 bits (90), Expect = 7e-11
Identities = 119/163 (73%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC-GGGCGCGCAATATTGTAC 151335
|| || |||||||| ||||||||||| || ||| ||| || |||| | |||||| ||
Sbjct 41937 TTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTG-AATATTCTAT 41995
Query 151336 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTTGC 151394
||||| | || | ||| |||||||| || | | || | || |||||| |||||
Sbjct 41996 AATTTCAGTGCAAAGATTACTGCATTTGAT-TGTGCCCACGTTCTGTTGATTTGATTTGC 42054
Query 151395 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437
| ||||| || ||||| | |||||| |||||||| |||||
Sbjct 42055 GATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTC 42097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488516378943600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |