Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3846 170 4e-37 seq4402 96.9 7e-15 seq713 89.7 1e-12 >seq3846 Length=171336 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | || ||||||||||| ||||| || |||||||| | Sbjct 16566 TACCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGG 16625 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || |||||||| |||||||||| ||| || || ||||| | Sbjct 16626 AAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTG 16685 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || || || ||||||||||| |||||||||||||| ||| || || | Sbjct 16686 GGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAA 16745 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || ||||| || || ||||| || || |||||||| Sbjct 16746 CTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| ||||||||||||||||| ||||| || || |||| | | ||| Sbjct 15896 CGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCG 15955 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| | | || || |||||||| ||||| ||||| Sbjct 15956 TCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTG 16015 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || || |||||||||||||| || || | || |||||||| || || Sbjct 16016 TCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATG 16075 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || | ||||| || || || |||||| Sbjct 16076 GTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||||| || || || || || || || |||||||| || || ||| | | || Sbjct 15212 CGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCA 15271 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || |||||||||||||| |||| ||| || || ||||| || ||||| ||||| Sbjct 15272 TCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTG 15331 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| |||||||| || || || || |||||| | || ||||||||||| || Sbjct 15332 TCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATT 15391 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || ||||| || ||||| Sbjct 15392 GTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| || || || || | |||||| || |||||||| || || || || || || Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| |||||||||||||||||||| | | || || |||||||| Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || ||||| || || || ||||| ||||| || || || || || Sbjct 15776 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACC 15835 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || || || || || ||||| || ||||| Sbjct 15836 TCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| || |||||||| || | || |||||||| || ||||| || || || Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||||| || || || || || || || | | || ||||||||||| Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || |||||||||||||| |||||||||||||| || || | || ||| Sbjct 16232 ATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACT 16291 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| || | ||||| ||||| || ||||| Sbjct 16292 TCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | || ||||| ||||||||||| || || ||||||| Sbjct 16338 TACCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAG 16397 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || ||||| || |||||||| | || || || ||||| | Sbjct 16398 AAAGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTG 16457 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| |||||||| || || || || |||||||| || || || |||| Sbjct 16458 GGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTA 16517 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || ||||| || || ||||| || || |||||||| Sbjct 16518 CTTCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || |||||||| || ||||| || || || || || || | | || Sbjct 14984 CGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCA 15043 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || ||||| || || || |||| || || || |||||||| |||||||| || Sbjct 15044 TCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTG 15103 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || || || ||||||||||| || ||| | || || ||||| || || Sbjct 15104 TCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATA 15163 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || || ||||| |||||||| Sbjct 15164 GTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 131 bits (144), Expect = 3e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || ||||| || || || || || ||||| | ||| || ||||| || || |||||| Sbjct 15458 GTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCTTCAAGCTGCTTTCCA 15517 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| |||| ||||| ||||| || || ||||| || ||||| || ||||||||| Sbjct 15518 GCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTT 15577 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || ||||| || || | || |||||||| || || || ||||| || | ||| Sbjct 15578 ACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTC 15637 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| || ||||| Sbjct 15638 TTCACAAAAATTTGCAT 15654 >seq4402 Length=410039 Score = 96.9 bits (106), Expect = 7e-15 Identities = 129/175 (74%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 198052 TGAGTAATTTATCTCCATGGTTACATTTTGGTCATG-TATCTCCACAACGCGTTGCCTTA 198110 |||| |||||||| |||||||| ||||| || |||| ||||| |||||| | |||| Sbjct 324613 TGAGCAATTTATCACCATGGTTTCATTTCGG-CATGATATCTGTACAACGATGTATCTTA 324555 Query 198111 GAAGTATTAAAATGTATACGAGAAAACaaaaaaaaC--GTTGAAACGTTTATAGATGAAA 198168 ||||| | ||||| ||| || | || |||||| || |||| || || || ||| Sbjct 324554 GAAGTGTCAAAAT--ATAAGAACAGTCACAAAAAATCTGTCGAAAGTTTCATGGAAGAAG 324497 Query 198169 TAATTATAAGAAGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGA 198223 || | || |||||| |||| ||||||||||||| ||||| ||||||| || Sbjct 324496 CTATAGTTAGGAGAGAATTGTCCGATAATTTTTGTTTTTATAACGAACATTATGA 324442 >seq713 Length=327371 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| |||||||| || |||||||| |||||||||||||| || | ||| || ||| Sbjct 311041 CCTTCTTTATCTTGTATTTTTGCTTTCACATTTTCAATCGTGTCGGAGGCTTCCACCTCC 310982 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || ||||| || || || || || || ||||||||||| || Sbjct 310981 AATGTGATTGTCTTCCCAGTTAAAGTTTTGACGAATATCTGCATGAT 310935 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || |||||||||||||| ||||| ||||| || ||| |||| || Sbjct 311353 CGGAGTACCAAGTGAAGCGTAGATTCTTTCTGGATATTGTAATCGGAAAGAGTTCTTCCA 311294 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 || || ||||| || |||||||| || | | || ||||| || || || ||| Sbjct 311293 TCCTCAAGTTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATCCCT 311240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981770302193297