Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq4302 96.9 5e-15
seq1113 96.9 5e-15
seq968 96.9 5e-15
seq4491 95.1 2e-14
seq4103 95.1 2e-14
>seq4302
Length=777177
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||
Sbjct 9363 AGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 9422
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 9423 TCCCCGCCGGGGAGG 9437
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 9365 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9424
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 9425 CCCGCCGGGGAG 9436
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 9436 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 9377
Query 139413 TACTAACGAGGATTT 139427
||||| |||||| ||
Sbjct 9376 TACTACCGAGGACTT 9362
>seq1113
Length=615210
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||
Sbjct 409687 AGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 409628
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 409627 TCCCCGCCGGGGAGG 409613
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 409685 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 409626
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 409625 CCCGCCGGGGAG 409614
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 409614 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 409673
Query 139413 TACTAACGAGGATTT 139427
||||| |||||| ||
Sbjct 409674 TACTACCGAGGACTT 409688
>seq968
Length=309140
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 219587 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 219646
Query 11787 TCCCCGACGAGGAGG 11801
|||||| || |||||
Sbjct 219647 TCCCCGCCGGGGAGG 219661
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 219589 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 219648
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 219649 CCCGCCGGGGAG 219660
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 219660 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 219601
Query 139413 TACTAACGAGGATTT 139427
||||| |||||| ||
Sbjct 219600 TACTACCGAGGACTT 219586
>seq4491
Length=410418
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 202271 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 202330
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 202331 CCCGCCGGGGAG 202342
Score = 93.3 bits (102), Expect = 6e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 202271 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 202330
Query 11789 CCCGACGAGGAGG 11801
|||| || |||||
Sbjct 202331 CCCGCCGGGGAGG 202343
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 202342 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 202283
Query 139413 TACTAACGAGGAT 139425
||||| |||||||
Sbjct 202282 TACTACCGAGGAT 202270
>seq4103
Length=484527
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||
Sbjct 376175 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 376116
Query 11788 CCCCGACGAGGAGG 11801
||||| || |||||
Sbjct 376115 CCCCGCCGGGGAGG 376102
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 376174 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 376115
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 376114 CCCGCCGGGGAG 376103
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||
Sbjct 380845 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 380786
Query 11788 CCCCGACGAGGAGG 11801
||||| || |||||
Sbjct 380785 CCCCGCCGGGGAGG 380772
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 380844 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 380785
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 380784 CCCGCCGGGGAG 380773
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||
Sbjct 381410 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 381351
Query 11788 CCCCGACGAGGAGG 11801
||||| || |||||
Sbjct 381350 CCCCGCCGGGGAGG 381337
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 381409 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 381350
Query 8718 CCCGACGAGGAG 8729
|||| || ||||
Sbjct 381349 CCCGCCGGGGAG 381338
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 376103 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 376162
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 376163 TACTACCGAGGA 376174
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 380773 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 380832
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 380833 TACTACCGAGGA 380844
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 381338 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 381397
Query 139413 TACTAACGAGGA 139424
||||| ||||||
Sbjct 381398 TACTACCGAGGA 381409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652807889787120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |