Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4302 96.9 5e-15 seq1113 96.9 5e-15 seq968 96.9 5e-15 seq4491 95.1 2e-14 seq4103 95.1 2e-14 >seq4302 Length=777177 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||| Sbjct 9363 AGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 9422 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 9423 TCCCCGCCGGGGAGG 9437 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 9365 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9424 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 9425 CCCGCCGGGGAG 9436 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 9436 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 9377 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 9376 TACTACCGAGGACTT 9362 >seq1113 Length=615210 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||| Sbjct 409687 AGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 409628 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 409627 TCCCCGCCGGGGAGG 409613 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 409685 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 409626 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 409625 CCCGCCGGGGAG 409614 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 409614 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 409673 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 409674 TACTACCGAGGACTT 409688 >seq968 Length=309140 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 219587 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 219646 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 219647 TCCCCGCCGGGGAGG 219661 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 219589 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 219648 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 219649 CCCGCCGGGGAG 219660 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 219660 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 219601 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 219600 TACTACCGAGGACTT 219586 >seq4491 Length=410418 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 202271 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 202330 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 202331 CCCGCCGGGGAG 202342 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 202271 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 202330 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 202331 CCCGCCGGGGAGG 202343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 202342 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 202283 Query 139413 TACTAACGAGGAT 139425 ||||| ||||||| Sbjct 202282 TACTACCGAGGAT 202270 >seq4103 Length=484527 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 376175 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 376116 Query 11788 CCCCGACGAGGAGG 11801 ||||| || ||||| Sbjct 376115 CCCCGCCGGGGAGG 376102 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 376174 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 376115 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 376114 CCCGCCGGGGAG 376103 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 380845 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 380786 Query 11788 CCCCGACGAGGAGG 11801 ||||| || ||||| Sbjct 380785 CCCCGCCGGGGAGG 380772 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 380844 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 380785 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 380784 CCCGCCGGGGAG 380773 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 381410 GTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 381351 Query 11788 CCCCGACGAGGAGG 11801 ||||| || ||||| Sbjct 381350 CCCCGCCGGGGAGG 381337 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 381409 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 381350 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 381349 CCCGCCGGGGAG 381338 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 376103 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 376162 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 376163 TACTACCGAGGA 376174 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 380773 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 380832 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 380833 TACTACCGAGGA 380844 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 381338 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 381397 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 381398 TACTACCGAGGA 381409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652807889787120