Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3846 113 4e-20 seq4480 104 2e-17 seq2212 104 2e-17 seq4498 91.5 1e-13 >seq3846 Length=171336 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||||| |||||| ||||| || |||||||| || || || ||| ||| || | Sbjct 16133 AAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGT--ACGTCCGTCTTCAA 16190 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| |||| | |||||||| || ||||| || || || ||||| | Sbjct 16191 GCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAA 16250 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||| | | |||| ||||||| || ||| || || | |||| |||||||| Sbjct 16251 TCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGC 16310 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || || ||||| Sbjct 16311 CAGTTAGGGTCTTGACAAAGATTTGCAT 16338 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| |||||||| || | || ||| || ||||||||||| Sbjct 15914 GTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCA 15973 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || | || | ||||||||||| ||||| || || |||||||| ||| ||| | ||| Sbjct 15974 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTC-TTGAATTTTCGCCTT 16032 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||||| || ||| || || | |||| ||||||||| || ||||| Sbjct 16033 TACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGT 16092 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 16093 CTTAACGAAAATTTGCAT 16110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| || || ||| | || | || ||||||||| ||||| || ||||| ||| Sbjct 15044 TCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTG 15103 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | |||| ||||| | | ||| || || | ||||| Sbjct 15104 TCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATA 15163 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||||| ||||| || || |||||||| Sbjct 15164 GTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || || |||||| | ||| | | | ||||||||||| || || Sbjct 16598 GTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCA-TCCTCGAGCTGTTTTCC 16656 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||||||||| || ||||| || || ||||| ||||||| || Sbjct 16657 GGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTTTGCTTT 16716 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| |||||| | | ||| || || | ||||| ||||||||| || | || Sbjct 16717 CACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTGCCAGTTAAGGT 16776 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 16777 CTTCACGAAGATCTGCAT 16794 >seq4480 Length=409792 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| || ||||| || | ||||| ||||||||||| |||||||| || || ||| Sbjct 402828 TCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTG 402769 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | || | || |||| | |||||| || | |||| | Sbjct 402768 TCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATG 402709 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || |||||||| |||||||| Sbjct 402708 GTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 402674 >seq2212 Length=252600 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| || ||||| || | ||||| ||||||||||| |||||||| || || ||| Sbjct 250324 TCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTG 250383 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | || | || |||| | |||||| || | |||| | Sbjct 250384 TCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATG 250443 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || |||||||| |||||||| Sbjct 250444 GTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 250478 >seq4498 Length=49303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 ||| || || || || |||||||| || || || || || ||| || |||| Sbjct 41936 GTTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTGAATATTCTAT 41995 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 || || | ||| ||||| ||||||||||| ||||||||||| |||||| |||| Sbjct 41996 AATTTCAGTGCAAAGATTACTGCATTTGATTGTGCCCACGTTCTGTTGATTTGATTTGCG 42055 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||||| || |||||||||||||| ||| ||||||||| ||||| Sbjct 42056 ATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTCAACCTG 42103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 148298 ATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 ||| |||||||| ||| | | ||| | || || ||||| || | ||| || || || | Sbjct 41237 ATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGA 41296 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 ||| || ||||| |||| || ||||| || || | ||| | || ||| || Sbjct 41297 TGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGC 41356 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 |||||||| ||||||||||| || | ||||| || ||||||||||| ||||||| Sbjct 41357 TTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATACTGCAA 41416 Query 148478 AAT 148480 ||| Sbjct 41417 AAT 41419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483393468596520