Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 113 4e-20
seq4480 104 2e-17
seq2212 104 2e-17
seq4498 91.5 1e-13
>seq3846
Length=171336
Score = 113 bits (124), Expect = 4e-20
Identities = 151/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
||||||| |||||| ||||| || |||||||| || || || ||| ||| || |
Sbjct 16133 AAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGT--ACGTCCGTCTTCAA 16190
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||||||||| ||| |||| | |||||||| || ||||| || || || ||||| |
Sbjct 16191 GCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAA 16250
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||||| ||| | | |||| ||||||| || ||| || || | |||| ||||||||
Sbjct 16251 TCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGC 16310
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| || || || || || || || |||||
Sbjct 16311 CAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| || |||||||| |||||||| || | || ||| || |||||||||||
Sbjct 15914 GTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCA 15973
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582
|| | || | ||||||||||| ||||| || || |||||||| ||| ||| | |||
Sbjct 15974 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTC-TTGAATTTTCGCCTT 16032
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| ||||||| || ||| || || | |||| ||||||||| || |||||
Sbjct 16033 TACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGT 16092
Query 133643 TTTTACGAAAATCTGCAT 133660
|| |||||||| |||||
Sbjct 16093 CTTAACGAAAATTTGCAT 16110
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||| || || ||| | || | || ||||||||| ||||| || ||||| |||
Sbjct 15044 TCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTG 15103
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||| || ||||| | |||| ||||| | | ||| || || | |||||
Sbjct 15104 TCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATA 15163
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||||||| ||||| || || ||||||||
Sbjct 15164 GTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || || |||||| | ||| | | | ||||||||||| || ||
Sbjct 16598 GTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCA-TCCTCGAGCTGTTTTCC 16656
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || | | ||||||||| || ||||| || || ||||| ||||||| ||
Sbjct 16657 GGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTTTGCTTT 16716
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| |||||| | | ||| || || | ||||| ||||||||| || | ||
Sbjct 16717 CACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTGCCAGTTAAGGT 16776
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 16777 CTTCACGAAGATCTGCAT 16794
>seq4480
Length=409792
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||| || ||||| || | ||||| ||||||||||| |||||||| || || |||
Sbjct 402828 TCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTG 402769
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||| || ||||| | || | || |||| | |||||| || | |||| |
Sbjct 402768 TCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATG 402709
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||| || |||||||| ||||||||
Sbjct 402708 GTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 402674
>seq2212
Length=252600
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||| || ||||| || | ||||| ||||||||||| |||||||| || || |||
Sbjct 250324 TCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTG 250383
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||| || ||||| | || | || |||| | |||||| || | |||| |
Sbjct 250384 TCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATG 250443
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||| || |||||||| ||||||||
Sbjct 250444 GTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 250478
>seq4498
Length=49303
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873
||| || || || || |||||||| || || || || || ||| || ||||
Sbjct 41936 GTTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTGAATATTCTAT 41995
Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933
|| || | ||| ||||| ||||||||||| ||||||||||| |||||| ||||
Sbjct 41996 AATTTCAGTGCAAAGATTACTGCATTTGATTGTGCCCACGTTCTGTTGATTTGATTTGCG 42055
Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981
||||| || |||||||||||||| ||| ||||||||| |||||
Sbjct 42056 ATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTCAACCTG 42103
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 148298 ATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357
||| |||||||| ||| | | ||| | || || ||||| || | ||| || || || |
Sbjct 41237 ATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGA 41296
Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417
||| || ||||| |||| || ||||| || || | ||| | || ||| ||
Sbjct 41297 TGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGC 41356
Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477
|||||||| ||||||||||| || | ||||| || ||||||||||| |||||||
Sbjct 41357 TTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATACTGCAA 41416
Query 148478 AAT 148480
|||
Sbjct 41417 AAT 41419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483393468596520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |