Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3846 118 7e-22 >seq3846 Length=171336 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| || | || ||||||| ||| |||||||| || ||||| || || Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| || | || || ||||| ||||||||||||||||||||| | || Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||| || || | |||| || | |||||| | || || Sbjct 16232 ATTCCCTCTTTGTCTTGAATCTT-TGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGAC 16290 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||| ||||| || |||| || || |||||||| |||||| Sbjct 16291 TTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCATA 16339 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| || || || ||||| | || || | ||||||||| ||||| Sbjct 15692 TCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAG 15751 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||||||||| ||| | || | || |||||||| |||||| ||| |||| Sbjct 15752 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTC-ACATT 15810 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | || || || | ||||| || || || ||||| ||||| || Sbjct 15811 CTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGAC 15870 Query 33738 AAAGATCTGCAT 33749 ||| || ||||| Sbjct 15871 AAAAATTTGCAT 15882 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| ||||| || || || ||||| |||||||| || ||||| | || || Sbjct 16586 ACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCG 16645 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||||||||| || || | |||||| ||| | || | || |||||||| Sbjct 16646 AGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGG 16705 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || |||| || | ||||| | || || |||| ||||| ||||| Sbjct 16706 ATCTT-TGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTT 16764 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || || || |||||||||||| Sbjct 16765 GCCAGTTAAGGTCTTCACGAAGATCTGCATA 16795 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||||| || ||||||||||| || || || || | || || | || Sbjct 16363 ATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCCTCAAGCTG 16422 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| |||||||| ||||| | |||||| ||| | || | || || ||||| |||||| Sbjct 16423 TTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTT 16482 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | ||| || | || | ||||| | || || |||| || || ||||| || | Sbjct 16483 CGCCTTC-ACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTTTTGCCAG 16541 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || || |||||||||||| Sbjct 16542 TTAAGGTCTTGACGAAGATCTGCATA 16567 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| ||||| ||| || || |||||||| || || || || || | || ||| Sbjct 14990 ACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCC 15049 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| || || || || || | |||||| ||| | || | ||||||||||| Sbjct 15050 AGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGG 15109 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | ||||| | || || || | ||||| ||||| Sbjct 15110 ATTTT-GGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||| ||||||||||||||| Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCATA 15199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328685880500160