Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 118 7e-22
>seq3846
Length=171336
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||||| || | || ||||||| ||| |||||||| || ||||| || ||
Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| || | || || ||||| ||||||||||||||||||||| | ||
Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || |||||||| ||| || || | |||| || | |||||| | || ||
Sbjct 16232 ATTCCCTCTTTGTCTTGAATCTT-TGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGAC 16290
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| | |||||| ||||| || |||| || || |||||||| ||||||
Sbjct 16291 TTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCATA 16339
Score = 105 bits (116), Expect = 4e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|||||||| |||||||| || || || ||||| | || || | ||||||||| |||||
Sbjct 15692 TCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAG 15751
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|||||||||||||| ||| | || | || |||||||| |||||| ||| ||||
Sbjct 15752 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTC-ACATT 15810
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
|| | ||||| | || || || | ||||| || || || ||||| ||||| ||
Sbjct 15811 CTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGAC 15870
Query 33738 AAAGATCTGCAT 33749
||| || |||||
Sbjct 15871 AAAAATTTGCAT 15882
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||| ||| ||||| || || || ||||| |||||||| || ||||| | || ||
Sbjct 16586 ACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCG 16645
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| |||||||||||||| || || | |||||| ||| | || | || ||||||||
Sbjct 16646 AGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGG 16705
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || || || |||| || | ||||| | || || |||| ||||| |||||
Sbjct 16706 ATCTT-TGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTT 16764
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| ||||| || || || ||||||||||||
Sbjct 16765 GCCAGTTAAGGTCTTCACGAAGATCTGCATA 16795
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605
||| ||||| ||||| || ||||||||||| || || || || | || || | ||
Sbjct 16363 ATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCCTCAAGCTG 16422
Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665
||| |||||||| ||||| | |||||| ||| | || | || || ||||| ||||||
Sbjct 16423 TTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTT 16482
Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724
| ||| || | || | ||||| | || || |||| || || ||||| || |
Sbjct 16483 CGCCTTC-ACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTTTTGCCAG 16541
Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750
|||| || || || ||||||||||||
Sbjct 16542 TTAAGGTCTTGACGAAGATCTGCATA 16567
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
|||| ||| ||||| ||| || || |||||||| || || || || || | || |||
Sbjct 14990 ACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCC 15049
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| ||||| || || || || || | |||||| ||| | || | |||||||||||
Sbjct 15050 AGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGG 15109
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
||||| | | |||| || | ||||| | || || || | ||||| |||||
Sbjct 15110 ATTTT-GGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || || ||||| |||||||||||||||
Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCATA 15199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328685880500160
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