Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3846 113 1e-19 >seq3846 Length=171336 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||| ||||| ||||| || || |||||| Sbjct 15195 CAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCTGAC 15136 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| || || ||||| |||||||||||| || ||| || Sbjct 15135 ACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAGCAG 15076 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || ||||| || || ||| |||||||||| | || | | || |||||| | Sbjct 15075 AGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAACATT 15016 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| |||||||||||||| || ||| Sbjct 15015 CAGAAGGAGTCTACTCTTCATCTGGTT 14989 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||| |||||||| || || ||||| | ||| Sbjct 16095 AAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTCCGACACTATTGAAAAT 16036 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| || || |||||| || ||| || | | ||||| Sbjct 16035 GTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTTTGATCTTT 15976 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | ||||| ||| |||| || | || ||||| |||||||||| ||| Sbjct 15975 GCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAATATCCAGAAAGAATCT 15916 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | ||| | |||| || Sbjct 15915 ACTCTTCACTTGGTTCTCCGACTACG 15890 Score = 104 bits (114), Expect = 6e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| ||||| | ||||| || ||||||||| | ||| || |||||| Sbjct 16770 ACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCTGACACGATTGAAAATGTGAAAGCA 16711 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| || || ||||| ||||| || ||| || ||| | ||||| |||||||| Sbjct 16710 AA-GATCCAGGACAAAGAGGGAATCCCACCAGACCAGCAGAGATTAATCTTTGCCGGAAA 16652 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| | || ||||| | ||| | ||||||| ||| ||||||| || ||||||||||| Sbjct 16651 ACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAACATCCAGAAGGAATCTACTCTTCA 16592 Query 206373 CCTTGT 206378 || || Sbjct 16591 TCTGGT 16586 Score = 100 bits (110), Expect = 7e-16 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| || || ||||| || || ||||||||||| || ||||| ||| | Sbjct 15418 TTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCTGATACAAT 15359 Query 206238 CGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 || | | ||||||||| |||||||| || || ||||| || ||| || ||| Sbjct 15358 AGAGAACGTGAAAGCAAAA-ATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGAT 15300 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || || || ||||| ||| |||||||||| | ||| | |||| || || | || | Sbjct 15299 TAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAATATTCAAA 15240 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| || ||||| || ||| | |||| || Sbjct 15239 AGGAGTCCACCCTTCATCTAGTTCTCCGACTACG 15206 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || ||||| ||||| |||||||| || || ||| Sbjct 16335 CAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCCGAC 16276 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| |||||||||||| ||||| |||||| || || || Sbjct 16275 ACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAG 16216 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || |||||||| |||||| | ||||| ||| | |||||| | || ||||| | Sbjct 16215 CGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAATATT 16156 Query 206353 CAGAAAGAGTCTAC 206366 || ||||| || || Sbjct 16155 CAAAAAGAATCCAC 16142 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || ||||| || ||||||||||| || || ||| ||||| | Sbjct 15874 TTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCGGACACTAT 15815 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| || ||||| || ||||| |||||| || ||| || | | Sbjct 15814 TGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAGCAGCGTTT 15755 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || ||||| || | |||||||| | ||| | | || |||||| |||| || Sbjct 15754 GATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAACATCCAAAA 15695 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 ||| || || || |||||||| Sbjct 15694 AGAATCCACCCTGCACCTTGT 15674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181752312376683