Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 113 1e-19
>seq3846
Length=171336
Score = 113 bits (124), Expect = 1e-19
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| |||||| | || || ||||| ||||| ||||| || || ||||||
Sbjct 15195 CAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCTGAC 15136
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| | ||| || ||| || || ||||| |||||||||||| || ||| ||
Sbjct 15135 ACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAGCAG 15076
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | || ||||| || || ||| |||||||||| | || | | || |||||| |
Sbjct 15075 AGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAACATT 15016
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||| |||||||||||||| || |||
Sbjct 15015 CAGAAGGAGTCTACTCTTCATCTGGTT 14989
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || ||||| ||||| |||||||| || || ||||| | |||
Sbjct 16095 AAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTCCGACACTATTGAAAAT 16036
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| || |||||||| || || |||||| || ||| || | | |||||
Sbjct 16035 GTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTTTGATCTTT 15976
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| | ||||| ||| |||| || | || ||||| |||||||||| |||
Sbjct 15975 GCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAATATCCAGAAAGAATCT 15916
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||| | ||| | |||| ||
Sbjct 15915 ACTCTTCACTTGGTTCTCCGACTACG 15890
Score = 104 bits (114), Expect = 6e-17
Identities = 136/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|| || ||||| ||||| | ||||| || ||||||||| | ||| || ||||||
Sbjct 16770 ACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCTGACACGATTGAAAATGTGAAAGCA 16711
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312
|| ||| || || ||||| ||||| || ||| || ||| | ||||| ||||||||
Sbjct 16710 AA-GATCCAGGACAAAGAGGGAATCCCACCAGACCAGCAGAGATTAATCTTTGCCGGAAA 16652
Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
||| | || ||||| | ||| | ||||||| ||| ||||||| || |||||||||||
Sbjct 16651 ACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAACATCCAGAAGGAATCTACTCTTCA 16592
Query 206373 CCTTGT 206378
|| ||
Sbjct 16591 TCTGGT 16586
Score = 100 bits (110), Expect = 7e-16
Identities = 153/214 (71%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| || || ||||| || || ||||||||||| || ||||| ||| |
Sbjct 15418 TTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCTGATACAAT 15359
Query 206238 CGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296
|| | | ||||||||| |||||||| || || ||||| || ||| || |||
Sbjct 15358 AGAGAACGTGAAAGCAAAA-ATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGAT 15300
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356
| || || || ||||| ||| |||||||||| | ||| | |||| || || | || |
Sbjct 15299 TAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAATATTCAAA 15240
Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| ||||| || ||||| || ||| | |||| ||
Sbjct 15239 AGGAGTCCACCCTTCATCTAGTTCTCCGACTACG 15206
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| || ||| ||| || || || || ||||| ||||| |||||||| || || |||
Sbjct 16335 CAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCCGAC 16276
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| |||||| |||||||||||| ||||| |||||| || || ||
Sbjct 16275 ACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAG 16216
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | || |||||||| |||||| | ||||| ||| | |||||| | || ||||| |
Sbjct 16215 CGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAATATT 16156
Query 206353 CAGAAAGAGTCTAC 206366
|| ||||| || ||
Sbjct 16155 CAAAAAGAATCCAC 16142
Score = 89.7 bits (98), Expect = 1e-12
Identities = 141/201 (70%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| | || ||||| || ||||||||||| || || ||| ||||| |
Sbjct 15874 TTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCGGACACTAT 15815
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| || ||| || ||||| || ||||| |||||| || ||| || | |
Sbjct 15814 TGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAGCAGCGTTT 15755
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||||| || ||||| || | |||||||| | ||| | | || |||||| |||| ||
Sbjct 15754 GATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAACATCCAAAA 15695
Query 206358 AGAGTCTACTCTTCACCTTGT 206378
||| || || || ||||||||
Sbjct 15694 AGAATCCACCCTGCACCTTGT 15674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181752312376683
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |