Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 125 7e-24
seq4480 91.5 1e-13
seq2212 91.5 1e-13
>seq3846
Length=171336
Score = 125 bits (138), Expect = 7e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971
||||||| ||||| | |||| || ||||||||||||||||| || ||| || ||||
Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502
Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031
|| ||||| || || | | |||| || |||||||| ||||| || ||||||||||| ||
Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562
Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091
|||||| ||| | | || | || |||| | ||| ||||| | || | |||
Sbjct 15563 TGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTT 15622
Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| ||||| ||||| || | ||||| |||||
Sbjct 15623 TTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||| ||||||| | | || ||||||||||| |||||||| || ||||| |||||
Sbjct 16129 AACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTC 16188
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||| || |||| | || | |||||| ||||||||||| || || ||||| ||
Sbjct 16189 AAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 16248
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| ||| || | | ||| | ||| |||| | ||| ||||| | ||| | |||||
Sbjct 16249 AATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTT 16308
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || || || | || || |||||
Sbjct 16309 GCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||| ||| | | ||||| || |||||||||||||| | ||||||| ||||||
Sbjct 14989 AACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTC 15048
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|||||||| || | | |||| | ||| || |||||||| || |||||||| ||
Sbjct 15049 CAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 15108
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||||| || | | ||| | || || | || ||| || || | || | |||||
Sbjct 15109 GATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||| ||||| | || ||||||||
Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
>seq4480
Length=409792
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995
|| || ||||||||||| | ||||| ||| ||||| ||||| |||| | ||||
Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802
Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055
|| ||||| || |||||||| || || ||||| || ||||| || | | |||
Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742
Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115
| ||||||| || |||||| || | || | || || || ||||| || |||| |||
Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682
Query 132116 ATCTGCAT 132123
||||||||
Sbjct 402681 ATCTGCAT 402674
>seq2212
Length=252600
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995
|| || ||||||||||| | ||||| ||| ||||| ||||| |||| | ||||
Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350
Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055
|| ||||| || |||||||| || || ||||| || ||||| || | | |||
Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410
Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115
| ||||||| || |||||| || | || | || || || ||||| || |||| |||
Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470
Query 132116 ATCTGCAT 132123
||||||||
Sbjct 250471 ATCTGCAT 250478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476584253594280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |