Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 134 1e-26
>seq3846
Length=171336
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| || || |||| || ||| | |||||| | |||||||| ||| |
Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| ||||| || | ||||| ||| ||| || |||||||| || || || ||||||
Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | | |||| || |||||| || || ||||| | | | | | || ||||||
Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403
|||||||||||||||||| | |||||||| | || ||||||| ||||
Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGAA 16110
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| | || ||||| | || || | |||||||| ||
Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || ||| | || ||| ||||||| || || ||||| || || || || |||
Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| ||| | |||| | || ||||| || ||||||| | | | | ||| || |||
Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|||||||| || |||||| ||||| ||||
Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGT 15218
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||||||||| ||||| | ||||| | || || || ||
Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| ||||| ||| | || || |||||| || |||||||| || || || || |||
Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | | || | | || |||||||||||||||| | | | | || |||||
Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703
Query 25355 ATTCAAAAAGAATCCACC 25372
|| |||||||||||||||
Sbjct 15702 ATCCAAAAAGAATCCACC 15685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445069235475360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |