Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3846 134 1e-26 >seq3846 Length=171336 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||| || ||| | |||||| | |||||||| ||| | Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | ||||| ||| ||| || |||||||| || || || |||||| Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || |||||| || || ||||| | | | | | || |||||| Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||||||| | |||||||| | || ||||||| |||| Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGAA 16110 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || ||||| | || || | |||||||| || Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || ||| ||||||| || || ||||| || || || || ||| Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| | || ||||| || ||||||| | | | | ||| || ||| Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| || |||||| ||||| |||| Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGT 15218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||||||||| ||||| | ||||| | || || || || Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| ||| | || || |||||| || |||||||| || || || || ||| Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | || |||||||||||||||| | | | | || ||||| Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703 Query 25355 ATTCAAAAAGAATCCACC 25372 || ||||||||||||||| Sbjct 15702 ATCCAAAAAGAATCCACC 15685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445069235475360