Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 132 5e-26
seq4480 93.3 4e-14
seq2212 93.3 4e-14
seq4498 86.0 6e-12
>seq3846
Length=171336
Score = 132 bits (146), Expect = 5e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543
|||| ||||| ||||| | || | |||| |||||||| |||||||| |||||||| |
Sbjct 16110 TTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCG 16169
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
||| | | | ||| || ||||| ||||| || |||||||||||||||||||| ||
Sbjct 16170 ACAAAG-TACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGA 16228
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| || || ||||| |||||||| ||| || || || | |||||||| | ||
Sbjct 16229 GGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCG 16288
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | || |||||||| || |||| || || || || ||||||||
Sbjct 16289 ACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||||| || || | || ||||| || |||||||| ||||| ||||||||||| |
Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || ||||| ||||| || ||||| |||||||||||||| || || ||
Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || ||||| || |||||||| || || || | ||||| || | || ||
Sbjct 15776 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACC 15835
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | ||| || || || || ||||| ||||| || |||||||||||
Sbjct 15836 TCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 129 bits (142), Expect = 6e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 134502 AACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTC 134560
|| || || |||| || ||||||||||||||||||||||| | ||| ||| | ||
Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAA-GGTTCGTCCATC 15501
Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620
|| ||||| || || ||||| || | ||||| || || || || ||||||||||| ||
Sbjct 15502 TTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTC 15561
Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGT 134680
||| |||||| ||| || || | ||||||||| | || || || | ||||||||
Sbjct 15562 TTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGT 15621
Query 134681 TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||| || || | ||| || || |||||||||||
Sbjct 15622 TTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
||||| | || | ||| || || ||||| || || || |||||||| | ||| |
Sbjct 15893 AGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGT 15952
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| ||||| ||||| |||||||||||||| || || || || || ||
Sbjct 15953 CCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCC 16012
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| ||||||||||| || || || | |||||||| | || || || | ||
Sbjct 16013 TTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTG 16072
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|||||||| || || | ||| ||||||||||||||||||
Sbjct 16073 ATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
||||| | || || || || ||||| ||||||||||| || |||||| || || |
Sbjct 15209 AGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGC 15268
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || |||||||| || |||||||| || | |||||| || || || || || ||
Sbjct 15269 CCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCC 15328
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| |||||||||||| ||| || || | ||| || || | || || || | ||||
Sbjct 15329 TTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTA 15388
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | |||||| || |||||||||||
Sbjct 15389 ATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | || || || || |||||||||||||| ||||| || ||| |
Sbjct 16796 CCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAA 16855
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || ||||||||||| |||||||| ||||| | |||||| || || ||
Sbjct 16856 AGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGA 16915
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || ||||| || ||||| || || || || | || || || | ||| ||
Sbjct 16916 ATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAACT 16975
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
||||| || ||||| || || || || || || || ||||| ||||| ||
Sbjct 16976 TCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCATGTT 17025
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
||| || | ||| || | || || || || || || ||||| ||||||||||||||
Sbjct 14971 TCCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 15030
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| ||| | || || |||||||| ||||| || || || | |||||| || || ||
Sbjct 15031 AAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGG 15090
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| |||||||| ||||| ||||| ||||| || | |||||| |||| || ||
Sbjct 15091 AATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAAC 15150
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | || || ||||| ||||| || ||||| || || || |||||
Sbjct 15151 CTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| || | || || || || || ||||| || || |||||||| || |
Sbjct 16340 CCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAA 16399
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || || ||||||||||| ||||| ||||| | |||||| || || ||
Sbjct 16400 AGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGG 16459
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||||||||| || || || | |||||| || | || ||
Sbjct 16460 ATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACT 16519
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || ||||| ||||| || ||||| || || ||||| || |||||
Sbjct 16520 TCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| || | || || || || || |||||||| || ||||| || ||| |
Sbjct 16568 CCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAA 16627
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || ||||||||||| || ||||| || || | |||||| || || ||
Sbjct 16628 AGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGG 16687
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || ||||| || || || ||| ||| || || | ||||| || | || ||
Sbjct 16688 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACT 16747
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || |||||||| || ||||| || || ||||| || |||||
Sbjct 16748 TCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
>seq4480
Length=409792
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || ||||||||||| || || | || ||||| |||||||| ||||| |
Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
| | |||||||| || || || || || ||||| || || ||||| ||||| |
Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | || ||||||| ||||| || ||||| ||||| || || || | || || ||||
Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684
Query 134704 AAATTTGCATTTTG 134717
| || |||||| ||
Sbjct 402683 AGATCTGCATTGTG 402670
>seq2212
Length=252600
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || ||||||||||| || || | || ||||| |||||||| ||||| |
Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
| | |||||||| || || || || || ||||| || || ||||| ||||| |
Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | || ||||||| ||||| || ||||| ||||| || || || | || || ||||
Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468
Query 134704 AAATTTGCATTTTG 134717
| || |||||| ||
Sbjct 250469 AGATCTGCATTGTG 250482
>seq4498
Length=49303
Score = 86.0 bits (94), Expect = 6e-12
Identities = 111/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 8254 GAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGC 8313
||||| || | || ||||||||||||||||| ||||| |||| ||||||
Sbjct 42097 GAAACTGGCACACCATACATGCTGTACAAAGATCACTGCAATCGCAAATCAAATCAACAG 42038
Query 8314 AACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC 8373
||||||||||| || ||||| ||||| ||| |||||||| || | || | ||||
Sbjct 42037 AACGTGGGCACAATCAAATGCAGTAATCTTTGCACTGAAATTATAGAATA-TTCAAGCCC 41979
Query 8374 -GACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403
|| ||||| || ||||| |||||||| |||
Sbjct 41978 TGAAGAAGTTGCTGTTTGTAATCTAGCATCG 41948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505369826037960
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