Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3846 132 5e-26 seq4480 93.3 4e-14 seq2212 93.3 4e-14 seq4498 86.0 6e-12 >seq3846 Length=171336 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| ||||| ||||| | || | |||| |||||||| |||||||| |||||||| | Sbjct 16110 TTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCG 16169 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| | | | ||| || ||||| ||||| || |||||||||||||||||||| || Sbjct 16170 ACAAAG-TACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGA 16228 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || ||||| |||||||| ||| || || || | |||||||| | || Sbjct 16229 GGAATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCG 16288 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || |||||||| || |||| || || || || |||||||| Sbjct 16289 ACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || || | || ||||| || |||||||| ||||| ||||||||||| | Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||| ||||| || ||||| |||||||||||||| || || || Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || |||||||| || || || | ||||| || | || || Sbjct 15776 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACC 15835 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || || || || ||||| ||||| || ||||||||||| Sbjct 15836 TCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882 Score = 129 bits (142), Expect = 6e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 134502 AACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTC 134560 || || || |||| || ||||||||||||||||||||||| | ||| ||| | || Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAA-GGTTCGTCCATC 15501 Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620 || ||||| || || ||||| || | ||||| || || || || ||||||||||| || Sbjct 15502 TTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTC 15561 Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGT 134680 ||| |||||| ||| || || | ||||||||| | || || || | |||||||| Sbjct 15562 TTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGT 15621 Query 134681 TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || | ||| || || ||||||||||| Sbjct 15622 TTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | || | ||| || || ||||| || || || |||||||| | ||| | Sbjct 15893 AGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGT 15952 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| |||||||||||||| || || || || || || Sbjct 15953 CCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCC 16012 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| || || || | |||||||| | || || || | || Sbjct 16013 TTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTG 16072 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||||||| || || | ||| |||||||||||||||||| Sbjct 16073 ATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | || || || || ||||| ||||||||||| || |||||| || || | Sbjct 15209 AGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGC 15268 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || |||||||| || | |||||| || || || || || || Sbjct 15269 CCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCC 15328 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||||||| ||| || || | ||| || || | || || || | |||| Sbjct 15329 TTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTA 15388 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | |||||| || ||||||||||| Sbjct 15389 ATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || || || || |||||||||||||| ||||| || ||| | Sbjct 16796 CCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAA 16855 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || ||||||||||| |||||||| ||||| | |||||| || || || Sbjct 16856 AGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGA 16915 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || ||||| || || || || | || || || | ||| || Sbjct 16916 ATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAACT 16975 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || ||||| || || || || || || || ||||| ||||| || Sbjct 16976 TCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCATGTT 17025 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| || | ||| || | || || || || || || ||||| |||||||||||||| Sbjct 14971 TCCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 15030 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || || |||||||| ||||| || || || | |||||| || || || Sbjct 15031 AAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGG 15090 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| ||||| ||||| || | |||||| |||| || || Sbjct 15091 AATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAAC 15150 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || ||||| ||||| || ||||| || || || ||||| Sbjct 15151 CTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || || || || || ||||| || || |||||||| || | Sbjct 16340 CCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAA 16399 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||||||||| ||||| ||||| | |||||| || || || Sbjct 16400 AGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGG 16459 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||||||||| || || || | |||||| || | || || Sbjct 16460 ATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACT 16519 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 16520 TCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || || || || || |||||||| || ||||| || ||| | Sbjct 16568 CCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAA 16627 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||||||||| || ||||| || || | |||||| || || || Sbjct 16628 AGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGG 16687 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || || || ||| ||| || || | ||||| || | || || Sbjct 16688 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACT 16747 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || ||||| || || ||||| || ||||| Sbjct 16748 TCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 >seq4480 Length=409792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| || || | || ||||| |||||||| ||||| | Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 | | |||||||| || || || || || ||||| || || ||||| ||||| | Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | || ||||||| ||||| || ||||| ||||| || || || | || || |||| Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684 Query 134704 AAATTTGCATTTTG 134717 | || |||||| || Sbjct 402683 AGATCTGCATTGTG 402670 >seq2212 Length=252600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| || || | || ||||| |||||||| ||||| | Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 | | |||||||| || || || || || ||||| || || ||||| ||||| | Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | || ||||||| ||||| || ||||| ||||| || || || | || || |||| Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468 Query 134704 AAATTTGCATTTTG 134717 | || |||||| || Sbjct 250469 AGATCTGCATTGTG 250482 >seq4498 Length=49303 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 8254 GAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGC 8313 ||||| || | || ||||||||||||||||| ||||| |||| |||||| Sbjct 42097 GAAACTGGCACACCATACATGCTGTACAAAGATCACTGCAATCGCAAATCAAATCAACAG 42038 Query 8314 AACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC 8373 ||||||||||| || ||||| ||||| ||| |||||||| || | || | |||| Sbjct 42037 AACGTGGGCACAATCAAATGCAGTAATCTTTGCACTGAAATTATAGAATA-TTCAAGCCC 41979 Query 8374 -GACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403 || ||||| || ||||| |||||||| ||| Sbjct 41978 TGAAGAAGTTGCTGTTTGTAATCTAGCATCG 41948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505369826037960