Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 165 1e-35
seq3919 109 8e-19
>seq4498
Length=49303
Score = 165 bits (182), Expect = 1e-35
Identities = 238/334 (71%), Gaps = 5/334 (1%)
Strand=Plus/Plus
Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175
|||| || |||||||||||| |||| || |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235
|||| |||||||| || || || | |||| | ||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 69236 AATCAAATCGTCCATCTA----TAACAAACATATTCAGTGCTACAGATGCTAGATTACAA 69291
|||| || ||| | |||||||||| || | || | |||||||||||||||
Sbjct 41905 AATCGTAT-GTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAA 41963
Query 69292 ACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTG 69351
|| || || || | || ||| ||||| ||| || || || || |||||||| ||||||
Sbjct 41964 ACAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTG 42023
Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411
|| || |||| || || ||||| || || ||| || ||||| || || |
Sbjct 42024 ATTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTAT 42083
Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAG 69445
|| || |||||||||| |||||| | || ||||
Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAG 42117
Score = 125 bits (138), Expect = 1e-23
Identities = 213/309 (69%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681
||||| || ||| || || ||||| ||||| || | |||| ||| | | | |
Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170
Query 68682 CTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCT 68741
| || | | || | || | ||| ||||| |||||||||||||| |||||||| ||||
Sbjct 41171 AGCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCG 41230
Query 68742 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGC 68801
|| || |||| || |||||||| | ||| | |||||||| || || |||||||| ||
Sbjct 41231 GCGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGC 41290
Query 68802 AGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGAT 68861
|| |||||||| ||||| || || | | || ||| | | || ||| | ||
Sbjct 41291 TGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTAT 41350
Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921
||| |||| ||| | ||| ||||||||||| | |||| |||||||| | || ||
Sbjct 41351 CTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATA 41410
Query 68922 TTGTAGAAT 68930
|| | |||
Sbjct 41411 CTGCAAAAT 41419
Score = 120 bits (132), Expect = 4e-22
Identities = 212/309 (69%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723
|| ||| ||||||| | ||| | |||||| | || ||| | ||||||||||||| ||
Sbjct 42508 CCAGTACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAA 42567
Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783
| || | | | || || | ||||| ||||| || || | ||| || || || ||||||
Sbjct 42568 ACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTA 42627
Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843
|| || | || ||| |||| || || |||||| ||||| ||||| | || ||| |
Sbjct 42628 TATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTA 42687
Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903
||| | || | ||| | ||| || || | ||||| || ||| || ||
Sbjct 42688 CCTTTGGCTCTGATACAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGT 42747
Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963
|| || ||||||| || ||||| || || || || ||||| || |||| | | ||||
Sbjct 42748 GCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTTCATTGTCAAAAGA 42807
Query 69964 AAACAGCTA 69972
|||||||||
Sbjct 42808 AAACAGCTA 42816
Score = 105 bits (116), Expect = 9e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068
|| ||||| || || || || ||||||| || | |||||||| |||||||| |||
Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004
Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128
|| ||||| |||||| || | || ||||||||||||| ||| || |||| |||
Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064
Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188
| ||| ||| ||||||| || || | |||| || ||||| || ||||| ||
Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124
Query 70189 TTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226
|| || ||| ||||| || |||||||| |||| ||
Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTT 43162
Score = 100 bits (110), Expect = 4e-16
Identities = 123/167 (74%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561
|||||| | ||| ||| |||||||| ||||||||||| |||||||||||||||| |
Sbjct 42263 TGTGTACAAAGC--TTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCGTGA 42320
Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621
|||||||| | ||| || | | ||| ||| ||||||||||| | ||| ||||||
Sbjct 42321 GGACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGAATC 42380
Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668
||||| || ||| | ||||| | || | || || || |||||
Sbjct 42381 CAAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427
>seq3919
Length=163912
Score = 109 bits (120), Expect = 8e-19
Identities = 141/194 (73%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727
|| || || || ||||| | ||||||||||||||||| ||||||| || ||| ||||
Sbjct 142242 AAGGTCAGACCTGGCATCAATCCACGCTTTTTGAGCCAGAATATGGAGGCGAAACTTCCA 142301
Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784
|||||||| ||||| ||||||||||| ||||| | || ||| ||| | ||| |
Sbjct 142302 CTGAAGAAGATCCCTTCGACTGCTGCAAAGGCAACGACTCGCTCACCGAAGTTTGCACTG 142361
Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844
|| || | |||||| ||| | ||||| | || ||||| ||||| || | ||||
Sbjct 142362 TCGTTGTTTATCCAGTTCAGCGCCCAGTTTGCCTTCTTAGCGACACAGGGAAGGTTTTCA 142421
Query 39845 ATAGCATTAAAGAG 39858
|| ||||| || ||
Sbjct 142422 ATGGCATTGAACAG 142435
Score = 93.3 bits (102), Expect = 6e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160
|||| |||| |||||||||||| |||||||||| || || ||||||||||| ||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 40220
|||| || || | |||| || || || || || ||||| | ||||| | | ||| |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 40221 TGGGTTCCA 40229
|||||||
Sbjct 143684 GTGGTTCCA 143692
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
||| || ||| |||||||||||| || || |||||||| |||||||| || |||||
Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405
| ||||| |||||||||||||| ||||||||
Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686869963893720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |