Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4498 165 1e-35 seq3919 109 8e-19 >seq4498 Length=49303 Score = 165 bits (182), Expect = 1e-35 Identities = 238/334 (71%), Gaps = 5/334 (1%) Strand=Plus/Plus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| || |||||||||||| |||| || |||||||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 |||| |||||||| || || || | |||| | ||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 69236 AATCAAATCGTCCATCTA----TAACAAACATATTCAGTGCTACAGATGCTAGATTACAA 69291 |||| || ||| | |||||||||| || | || | ||||||||||||||| Sbjct 41905 AATCGTAT-GTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAA 41963 Query 69292 ACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTG 69351 || || || || | || ||| ||||| ||| || || || || |||||||| |||||| Sbjct 41964 ACAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTG 42023 Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 || || |||| || || ||||| || || ||| || ||||| || || | Sbjct 42024 ATTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTAT 42083 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAG 69445 || || |||||||||| |||||| | || |||| Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAG 42117 Score = 125 bits (138), Expect = 1e-23 Identities = 213/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681 ||||| || ||| || || ||||| ||||| || | |||| ||| | | | | Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170 Query 68682 CTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCT 68741 | || | | || | || | ||| ||||| |||||||||||||| |||||||| |||| Sbjct 41171 AGCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCG 41230 Query 68742 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGC 68801 || || |||| || |||||||| | ||| | |||||||| || || |||||||| || Sbjct 41231 GCGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGC 41290 Query 68802 AGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGAT 68861 || |||||||| ||||| || || | | || ||| | | || ||| | || Sbjct 41291 TGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTAT 41350 Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921 ||| |||| ||| | ||| ||||||||||| | |||| |||||||| | || || Sbjct 41351 CTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATA 41410 Query 68922 TTGTAGAAT 68930 || | ||| Sbjct 41411 CTGCAAAAT 41419 Score = 120 bits (132), Expect = 4e-22 Identities = 212/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || ||| ||||||| | ||| | |||||| | || ||| | ||||||||||||| || Sbjct 42508 CCAGTACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAA 42567 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 | || | | | || || | ||||| ||||| || || | ||| || || || |||||| Sbjct 42568 ACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTA 42627 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || || | || ||| |||| || || |||||| ||||| ||||| | || ||| | Sbjct 42628 TATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTA 42687 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 ||| | || | ||| | ||| || || | ||||| || ||| || || Sbjct 42688 CCTTTGGCTCTGATACAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGT 42747 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 || || ||||||| || ||||| || || || || ||||| || |||| | | |||| Sbjct 42748 GCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTTCATTGTCAAAAGA 42807 Query 69964 AAACAGCTA 69972 ||||||||| Sbjct 42808 AAACAGCTA 42816 Score = 105 bits (116), Expect = 9e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 || ||||| || || || || ||||||| || | |||||||| |||||||| ||| Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004 Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || ||||| |||||| || | || ||||||||||||| ||| || |||| ||| Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188 | ||| ||| ||||||| || || | |||| || ||||| || ||||| || Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124 Query 70189 TTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 || || ||| ||||| || |||||||| |||| || Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTT 43162 Score = 100 bits (110), Expect = 4e-16 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 |||||| | ||| ||| |||||||| ||||||||||| |||||||||||||||| | Sbjct 42263 TGTGTACAAAGC--TTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCGTGA 42320 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 |||||||| | ||| || | | ||| ||| ||||||||||| | ||| |||||| Sbjct 42321 GGACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGAATC 42380 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| || ||| | ||||| | || | || || || ||||| Sbjct 42381 CAAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427 >seq3919 Length=163912 Score = 109 bits (120), Expect = 8e-19 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || || || ||||| | ||||||||||||||||| ||||||| || ||| |||| Sbjct 142242 AAGGTCAGACCTGGCATCAATCCACGCTTTTTGAGCCAGAATATGGAGGCGAAACTTCCA 142301 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784 |||||||| ||||| ||||||||||| ||||| | || ||| ||| | ||| | Sbjct 142302 CTGAAGAAGATCCCTTCGACTGCTGCAAAGGCAACGACTCGCTCACCGAAGTTTGCACTG 142361 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || || | |||||| ||| | ||||| | || ||||| ||||| || | |||| Sbjct 142362 TCGTTGTTTATCCAGTTCAGCGCCCAGTTTGCCTTCTTAGCGACACAGGGAAGGTTTTCA 142421 Query 39845 ATAGCATTAAAGAG 39858 || ||||| || || Sbjct 142422 ATGGCATTGAACAG 142435 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 |||| |||| |||||||||||| |||||||||| || || ||||||||||| ||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 40220 |||| || || | |||| || || || || || ||||| | ||||| | | ||| | Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683 Query 40221 TGGGTTCCA 40229 ||||||| Sbjct 143684 GTGGTTCCA 143692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||| |||||||||||| || || |||||||| |||||||| || ||||| Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 | ||||| |||||||||||||| |||||||| Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686869963893720