Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 132 4e-26
seq4498 91.5 1e-13
>seq3846
Length=171336
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|| |||||||| || || |||||||||||||||||||| || | || |||||||
Sbjct 16130 ACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCA 16189
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || |||||| |||| | |||||| ||||| || || | |||||||| ||
Sbjct 16190 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGA 16249
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| || | |||| | |||||| | ||| || ||||| | || || | ||||
Sbjct 16250 ATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTG 16309
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251
|| || || || || ||||||||||||||| ||
Sbjct 16310 CCAGTTAGGGTCTTGACAAAGATTTGCATACCT 16342
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | || | |||| ||| | ||||| || || || || || || |||
Sbjct 16568 CCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAA 16627
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | || ||||||||||| ||||| | || | | ||| || || || ||
Sbjct 16628 AGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGG 16687
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||||| || |||||| ||||| |||| | ||||| | || ||||||
Sbjct 16688 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACT 16747
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251
|| || || || | |||||| || | || ||||| ||||| |||||| ||
Sbjct 16748 TCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCATACCT 16798
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||||| ||||| || ||||||||||| | | | || |||||||
Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCA 15961
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || | || | |||||| || || || || | ||||| || ||
Sbjct 15962 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGA 16021
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|| || || | |||| | |||||| | ||| |||||||| | || || | ||||
Sbjct 16022 ATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTG 16081
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || ||||| || || || ||||||||
Sbjct 16082 CCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || ||||||||||| |||||| | | ||| | ||||| |||||||| ||
Sbjct 15230 GTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCA 15289
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| |||| | | ||| || || || || | ||||| || || || || ||||
Sbjct 15290 GCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTC 15349
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | |||| || || | || || ||||| | ||| || | || || || ||||||
Sbjct 15350 ACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTT 15409
Query 27231 TTCACAAAGATTTGCATAGCT 27251
|| ||||| ||||||||| ||
Sbjct 15410 TTGACAAAAATTTGCATACCT 15430
>seq4498
Length=49303
Score = 91.5 bits (100), Expect = 1e-13
Identities = 207/306 (68%), Gaps = 13/306 (4%)
Strand=Plus/Plus
Query 130666 TTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTACA-ATCCA- 130723
|||||| ||| || ||||| ||||| ||||| |||| ||| ||| | | |||
Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170
Query 130724 AGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGAC- 130782
||| ||| |||||| ||| ||||| ||| | |||||||| || |||| | |||
Sbjct 41171 AGCAGTA--AGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACT 41228
Query 130783 --GCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATT 130840
|||| || |||| |||||| || | | ||| | ||||| ||||| |||| |||
Sbjct 41229 CGGCGTGTA---TAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATT 41285
Query 130841 TGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTC 130900
|||||||| | ||| || ||||| || | | ||| ||||| || | ||||| |
Sbjct 41286 TGTGCTGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTA 41345
Query 130901 GTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCAC 130960
| || || |||| | |||| ||||| ||| || ||| ||||| ||||||
Sbjct 41346 GCTATCTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACA---TTCCAC 41402
Query 130961 ATATCA 130966
|| |||
Sbjct 41403 ATGTCA 41408
Score = 86.0 bits (94), Expect = 5e-12
Identities = 180/268 (67%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 131721 TAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780
|| |||||||||||| ||||| || |||| |||| ||||| ||||| || || ||||
Sbjct 42512 TACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAAACTG 42571
Query 131781 CCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATA 131837
| | || ||| | |||| || ||||| | ||| | | | | || || ||||
Sbjct 42572 CAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTATATA 42631
Query 131838 CGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCAT 131897
|||||||||| || | | ||| | | | |||||| || | ||||| | || |
Sbjct 42632 CGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTACCTT 42691
Query 131898 TGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGC 131957
|||||||||| || | || | ||||| |||||| | | ||| || |||||||
Sbjct 42692 TGGCTCTGATACAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGTGCGC 42751
Query 131958 ATTTGGTTAGAGTGTTATAGATACCTTC 131985
||| | | ||| | ||| || |||||
Sbjct 42752 ATTGTTTCAAAGTATCATAAATTCCTTC 42779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424910975889576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |