Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3846 132 4e-26 seq4498 91.5 1e-13 >seq3846 Length=171336 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || |||||||| || || |||||||||||||||||||| || | || ||||||| Sbjct 16130 ACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCA 16189 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| |||| | |||||| ||||| || || | |||||||| || Sbjct 16190 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGA 16249 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | |||| | |||||| | ||| || ||||| | || || | |||| Sbjct 16250 ATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTG 16309 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || || ||||||||||||||| || Sbjct 16310 CCAGTTAGGGTCTTGACAAAGATTTGCATACCT 16342 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | |||| ||| | ||||| || || || || || || ||| Sbjct 16568 CCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAA 16627 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || ||||||||||| ||||| | || | | ||| || || || || Sbjct 16628 AGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGG 16687 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || |||||| ||||| |||| | ||||| | || |||||| Sbjct 16688 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACT 16747 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | |||||| || | || ||||| ||||| |||||| || Sbjct 16748 TCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCATACCT 16798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| ||||| || ||||||||||| | | | || ||||||| Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCA 15961 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || | |||||| || || || || | ||||| || || Sbjct 15962 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGA 16021 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || || | |||| | |||||| | ||| |||||||| | || || | |||| Sbjct 16022 ATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTG 16081 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || || || |||||||| Sbjct 16082 CCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||| |||||| | | ||| | ||||| |||||||| || Sbjct 15230 GTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCA 15289 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| | | ||| || || || || | ||||| || || || || |||| Sbjct 15290 GCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTC 15349 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | |||| || || | || || ||||| | ||| || | || || || |||||| Sbjct 15350 ACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGTT 15409 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || ||||| ||||||||| || Sbjct 15410 TTGACAAAAATTTGCATACCT 15430 >seq4498 Length=49303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 207/306 (68%), Gaps = 13/306 (4%) Strand=Plus/Plus Query 130666 TTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTACA-ATCCA- 130723 |||||| ||| || ||||| ||||| ||||| |||| ||| ||| | | ||| Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170 Query 130724 AGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGAC- 130782 ||| ||| |||||| ||| ||||| ||| | |||||||| || |||| | ||| Sbjct 41171 AGCAGTA--AGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACT 41228 Query 130783 --GCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATT 130840 |||| || |||| |||||| || | | ||| | ||||| ||||| |||| ||| Sbjct 41229 CGGCGTGTA---TAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATT 41285 Query 130841 TGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTC 130900 |||||||| | ||| || ||||| || | | ||| ||||| || | ||||| | Sbjct 41286 TGTGCTGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTA 41345 Query 130901 GTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCAC 130960 | || || |||| | |||| ||||| ||| || ||| ||||| |||||| Sbjct 41346 GCTATCTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACA---TTCCAC 41402 Query 130961 ATATCA 130966 || ||| Sbjct 41403 ATGTCA 41408 Score = 86.0 bits (94), Expect = 5e-12 Identities = 180/268 (67%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 131721 TAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780 || |||||||||||| ||||| || |||| |||| ||||| ||||| || || |||| Sbjct 42512 TACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAAACTG 42571 Query 131781 CCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATA 131837 | | || ||| | |||| || ||||| | ||| | | | | || || |||| Sbjct 42572 CAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTATATA 42631 Query 131838 CGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCAT 131897 |||||||||| || | | ||| | | | |||||| || | ||||| | || | Sbjct 42632 CGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTACCTT 42691 Query 131898 TGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGC 131957 |||||||||| || | || | ||||| |||||| | | ||| || ||||||| Sbjct 42692 TGGCTCTGATACAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGTGCGC 42751 Query 131958 ATTTGGTTAGAGTGTTATAGATACCTTC 131985 ||| | | ||| | ||| || ||||| Sbjct 42752 ATTGTTTCAAAGTATCATAAATTCCTTC 42779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910975889576