Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3919 98.7 3e-15 >seq3919 Length=163912 Score = 98.7 bits (108), Expect = 3e-15 Identities = 107/141 (76%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| |||||| | || || ||||| | |||||||| | || || || || || || Sbjct 142352 CTTCGGTGAGCGAGTCGTTGCCTTTGCAGCAGTCGAAGGGATCTTCTTCAGTGGAAG-TT 142294 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | |||||||| |||||| | |||||||||||| | |||| ||||||||||| || |||| Sbjct 142293 TCGCCTCCATATTCTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTGACCTTCAGCAACG 142234 Query 443819 AACTGATCAGTCGGGACGAGG 443839 | || || ||||||||| Sbjct 142233 AGCTCATTTCCAGGGACGAGG 142213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588243954439735