Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4498 125 8e-24 >seq4498 Length=49303 Score = 125 bits (138), Expect = 8e-24 Identities = 237/348 (68%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 104882 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTAC 104941 ||| ||||| |||||| | || ||||| || ||||| |||||||||||||| ||| Sbjct 42130 GATCTGTGGTTAGCTATCATGAACTCTCAGGTTGAAACTGGCACACCATACATGCTGTAC 42071 Query 104942 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAT 105001 ||||| ||| || | || |||||| |||| |||| ||||| | ||| Sbjct 42070 AAAGATCACTGCAATCGCAAATCAAATCAACAGAACGTGGGCACAATCAAATGCAGTAAT 42011 Query 105002 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 105061 || || || ||||| | |||| | || | || || ||||| ||||| || ||| Sbjct 42010 CTTTGCACTGAAATTATAGAATATTCAAGCCCTGAAGAAGTTGCTGTTTGTAATCTAGCA 41951 Query 105062 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 105121 || || ||| | || || ||| || || |||||||| |||| | |||||||| Sbjct 41950 TCGATTGCTGTTAACATGTTTGTTACCCCGGA---AAAGACATACGATTTTAAAAAACTC 41894 Query 105122 CACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 105181 | |||||||| |||| || || | ||||| |||| | ||||||||| || | || Sbjct 41893 AAGGAAGTTACCAAAATCGTAGCCTACAACCTGAACAAAATTATTGATATCAACTACTAT 41834 Query 105182 CCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || || ||| ||||||||||||||||| | ||||||||| Sbjct 41833 CCGATTCCTGAAGCTGAAAAATCTAATATGAGACATAGACCAATTGGT 41786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583227823892520