Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 125 8e-24
>seq4498
Length=49303
Score = 125 bits (138), Expect = 8e-24
Identities = 237/348 (68%), Gaps = 3/348 (1%)
Strand=Plus/Minus
Query 104882 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTAC 104941
||| ||||| |||||| | || ||||| || ||||| |||||||||||||| |||
Sbjct 42130 GATCTGTGGTTAGCTATCATGAACTCTCAGGTTGAAACTGGCACACCATACATGCTGTAC 42071
Query 104942 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAT 105001
||||| ||| || | || |||||| |||| |||| ||||| | |||
Sbjct 42070 AAAGATCACTGCAATCGCAAATCAAATCAACAGAACGTGGGCACAATCAAATGCAGTAAT 42011
Query 105002 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 105061
|| || || ||||| | |||| | || | || || ||||| ||||| || |||
Sbjct 42010 CTTTGCACTGAAATTATAGAATATTCAAGCCCTGAAGAAGTTGCTGTTTGTAATCTAGCA 41951
Query 105062 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 105121
|| || ||| | || || ||| || || |||||||| |||| | ||||||||
Sbjct 41950 TCGATTGCTGTTAACATGTTTGTTACCCCGGA---AAAGACATACGATTTTAAAAAACTC 41894
Query 105122 CACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 105181
| |||||||| |||| || || | ||||| |||| | ||||||||| || | ||
Sbjct 41893 AAGGAAGTTACCAAAATCGTAGCCTACAACCTGAACAAAATTATTGATATCAACTACTAT 41834
Query 105182 CCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229
|| || ||| ||||||||||||||||| | |||||||||
Sbjct 41833 CCGATTCCTGAAGCTGAAAAATCTAATATGAGACATAGACCAATTGGT 41786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583227823892520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |