Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4170 91.5 2e-13 >seq4170 Length=99706 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/272 (68%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | || || | || || ||||| |||| || ||||||||| Sbjct 60084 GTGAAAATATAACGAGGACTAGCAGAGTCTTTTCCACCAATGAGCCTGGTACCAAACTGT 60025 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | ||| | ||||| |||||| || |||||||| || |||||||| | | Sbjct 60024 CCAATGGGTTGGAGTAAGTTGATATTGTTGCTACCGACGAAATTTTGGGCCAAATTAATA 59965 Query 152149 ATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || ||| || || ||||||||||| || || || | ||||| || | | || Sbjct 59964 ATAGTAGCCATG-AGGGAAGCTTCACCGTGATGGTATGCAGATTGCTCGGCAACTGAACC 59906 Query 152208 CGCCAACTGCGCCAC-----CTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA 152262 |||| ||||| || ||||| || |||| | || || | ||| | |||| Sbjct 59905 AGCCAGTTGCGCTACTTTAACTTCACGTTTATCGTTACGT-----TTCAAACATGTGTAA 59851 Query 152263 ATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 || ||||| | ||| ||||| |||||||| Sbjct 59850 ATGACCTTTCTCTGACCAGGTTTAAAACCGTC 59819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547185061775400