Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3846 188 8e-43 seq4480 178 1e-39 seq2212 178 1e-39 seq713 87.8 2e-12 seq4170 86.0 7e-12 >seq3846 Length=171336 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || || ||||| || || || || ||||| || | Sbjct 17022 ATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGCATCT 16963 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| ||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct 16962 GATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAG 16903 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || ||||| |||| || ||||| | || ||||| Sbjct 16902 CAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTATAAC 16843 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| || ||||||||| | ||||||||||| || Sbjct 16842 ATCCAAAAGGAATCCACCCTCCATCTAGTCCTTCGTCTTCGCGGAGG 16796 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || ||||| || ||||| |||||| | || || ||| || | Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || |||| || |||||||| |||||||||||||| || ||||||||| Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||||||||||| || || || || |||| ||||| || | ||||||||| Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| ||||||||||| | || || || || || Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGTTCTCCGACTACGTGGCGG 15200 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || ||||| || ||| | ||||||||| | Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| || |||||||| |||| || || || | ||||| || Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| || || || ||| | || || || || || Sbjct 15702 ATCCAAAAAGAATCCACCCTGCACCTTGTCCTTCGGCTGCGAGGAGG 15656 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || || || | || |||||| | Sbjct 16111 AATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTC 16052 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| |||||||| |||||||||||||||||||||||||| Sbjct 16051 CGACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCA 15992 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| ||||| || || || | || ||| || ||||||| || Sbjct 15991 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAA 15932 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| || ||||| |||||||| | || | || || || ||||| Sbjct 15931 TATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCGACTACGTGGTGG 15884 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || ||||| || || || ||||| |||||| | | Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||| || || || |||||||| |||||||| || ||||||||| Sbjct 16734 GACACGATTGAAAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAG 16675 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| ||||| || || || |||||||||| || || || | || ||||| Sbjct 16674 CAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAAC 16615 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||||||||| ||| | ||||| ||||| || Sbjct 16614 ATCCAGAAGGAATCTACTCTTCATCTGGTCCTTCGTCTCCGCGGAGG 16568 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || | |||||||| ||||| || | ||||||||| | | Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| ||||| || ||||| || |||||||||||||||||| Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| || || || || || || || |||| |||||||| ||||||| || Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||||||||| || | || || || |||||| Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGGCTCCGTGGTGGA 14971 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||| |||||||| ||||| || ||| | Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| |||||||| |||||||||||||| || ||||||||| Sbjct 16506 GACACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 16447 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || ||||||| ||||| || | || || || Sbjct 16446 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAAC 16387 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| ||||||||||| ||| | ||||| || || || Sbjct 16386 ATCCAGAAAGAATCAACTCTTCATCTTGTCCTTCGTCTCCGTGGAGG 16340 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || ||||| || || || | || || ||| | Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| || || || | ||||| | | ||||| ||| Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| |||||||| | ||| |||| | || || | |||||| Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGA 16111 Score = 125 bits (138), Expect = 8e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| ||||| || ||||| | || || ||| | Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || || ||||| || ||||| || || ||||| |||||||| Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| || || |||| || ||| | | ||||| || Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||||||||| || | ||||| || || Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTT 15443 >seq4480 Length=409792 Score = 178 bits (196), Expect = 1e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || ||||||||||| ||| | Sbjct 402673 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 402732 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||||||||| |||||||| |||||||| ||||||||||| Sbjct 402733 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 402792 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || ||||| || || ||||||||||||| ||||| || ||||||| || Sbjct 402793 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 402852 Query 27585 TGTCCAAAAGG 27595 |||| |||| Sbjct 402853 CATCCAGAAGG 402863 >seq2212 Length=252600 Score = 178 bits (196), Expect = 1e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || ||||||||||| ||| | Sbjct 250479 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 250420 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||||||||| |||||||| |||||||| ||||||||||| Sbjct 250419 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 250360 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || ||||| || || ||||||||||||| ||||| || ||||||| || Sbjct 250359 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 250300 Query 27585 TGTCCAAAAGG 27595 |||| |||| Sbjct 250299 CATCCAGAAGG 250289 >seq713 Length=327371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || || ||||||||| | ||||||||||| |||||||| ||||||| | Sbjct 311241 GGGATTCCCCCTGATCAGCAGCGTTTGATTTTTGCTGGCAAGCAACTTGAGGATGGAAGA 311300 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | || || ||| |||| || ||||| || ||||| | || | || ||||| Sbjct 311301 ACTCTTTCCGATTACAATATCCAGAAAGAATCTACGCTTCACTTGGTACTCCGCCTTCGT 311360 Query 27628 GGTGGA 27633 |||||| Sbjct 311361 GGTGGA 311366 >seq4170 Length=99706 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 32045 GTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACG 32104 |||| | || || ||||| ||| | || | || || |||||| | || || || |||| Sbjct 59880 GTGAAGTTAAAGTAGCGCAACTGGCTGGTTCAGTTGCCGAGCAATCTGCATACCATCACG 59939 Query 32105 GCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATA 32164 | || || || ||| || || ||| | || | || || || || |||||| || | Sbjct 59940 GTGAAGCTTCCCTCATGGCTACTATTATTAATTTGGCCCAAAATTTCGTCGGTAGCAACA 59999 Query 32165 ACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATG 32224 | | ||||||||| | || |||||||||||| ||| ||||| ||||| || || Sbjct 60000 ATATCAACTTACTCCAACCCATTGGACAGTTTGGTACCAGGCTCATTGGTGGAAAAGACT 60059 Query 32225 CTGCGAGCTCCCGTTACATCTTCAC 32249 |||| || | ||||| || ||||| Sbjct 60060 CTGCTAGTCCTCGTTATATTTTCAC 60084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570278156075760