Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3846 125 4e-24 >seq3846 Length=171336 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | || | ||| || ||| |||||||||||| ||||| || ||| Sbjct 15200 CCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAA 15259 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| || ||||| ||||| | ||| ||||| || || Sbjct 15260 AGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGG 15319 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| ||||| ||| ||| | ||||| || ||| || Sbjct 15320 ATTCCCTCCTTGTCT-TGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGAC 15378 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | ||||| |||||||| ||||| Sbjct 15379 TTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| ||||| ||||| || ||||||||||| ||||| || || Sbjct 16577 AGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGG 16636 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| |||||||| ||||| | ||| ||||| || || | |||||| Sbjct 16637 CCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCT 16696 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| ||||||| ||| | | ||| ||||| ||| ||||| | ||| Sbjct 16697 TTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTG 16756 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || ||||| || ||||| || |||||||| Sbjct 16757 ATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| || || || | ||||| | |||||||| || || || ||||| Sbjct 15464 TCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAG 15523 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||||||||||| || || | || || |||||| ||| ||||| ||| ||| | Sbjct 15524 ATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGAT-TTTTGCTTTTACGTT 15582 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||||||||| | ||| ||||||| ||| || ||||| || || | || ||||| Sbjct 15583 CTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCAC 15642 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 15643 AAAAATTTGCAT 15654 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| ||||| || || || ||||| ||||| ||||| || || Sbjct 16349 AGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGG 16408 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| ||||| |||||||| || || | ||| ||||| || || | ||||||| Sbjct 16409 CCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCC 16468 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || ||| | ||||||||| ||| ||||| | ||| Sbjct 16469 TTGTCT-TGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGT 16527 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || ||||| || || || || |||||||| Sbjct 16528 AATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 Score = 104 bits (114), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||| ||| |||||||| ||||||||||| ||| Sbjct 16796 CCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGAA 16855 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || || | ||| ||||| || || Sbjct 16856 AGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGGA 16915 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCAC 34658 | |||||| ||||| ||||| || | | || || || ||| || || Sbjct 16916 ATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCT-TCAAC 16974 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||| | ||| || || || || || || || || ||||||||||||||||| || Sbjct 16975 TTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCATGTTTAT 17028 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| || || || || || || ||||| | || || |||||||| Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCA 15961 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || ||||| || |||||||| ||||| || || | ||||||||||||| || Sbjct 15962 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCT-TG 16020 Query 34618 ATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | |||| | ||| ||||| | ||| ||||||| || || ||||| Sbjct 16021 AATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTT 16080 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| ||||| Sbjct 16081 GCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314712250825859