Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3846 149 5e-31 seq4480 109 5e-19 seq2212 109 5e-19 seq4494 84.2 2e-11 seq713 82.4 7e-11 >seq3846 Length=171336 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || ||||| | ||||| | ||||| || | ||| Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||| ||||||||||||||||| ||||| || ||| Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || | ||||| | ||| | || || |||||| Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||||||||| ||||||| | |||| || || || Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGGTAT 15425 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||||| |||| || | || || || |||| Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||| |||||||||||||| || || || || || Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||||| ||| || ||||| ||||||| | ||| |||| || |||||| Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | ||| ||||| | || | || ||||| Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGGCTCCGTGGTGG 14972 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || ||||| | || || | ||||| || | ||| Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| |||||||||||||| || || || || ||||| Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||| || | |||||| | || | || || ||||| Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||||||||||| ||| | || || | ||||| || Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGAAT 16109 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || ||| | |||||| | ||||| || | || Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||||||||||||| || || || ||||| || || Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || ||||| ||||||| | || ||||||| || || Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||||||||| ||| | ||| | ||| Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGTT 15217 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || ||||| | || || | ||||| || | ||| Sbjct 16110 ATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTCC 16051 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||||||||| || || || || || || || Sbjct 16050 GACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 15991 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||| || | |||||| | |||| | || || ||||| Sbjct 15990 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAAT 15931 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||||| | || | || ||||| || Sbjct 15930 ATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCGACTACGTGGTGGGAT 15881 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || | || ||||| ||||||| |||||||| || | || Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||||||||| || || || ||||| || || Sbjct 16506 GACACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 16447 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| | || || | || |||| ||||||||| Sbjct 16446 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAAC 16387 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | ||| | || | ||| | || || || || Sbjct 16386 ATCCAGAAAGAATCAACTCTTCATCTTGTCCTTCGTCTCCGTGGAGGTAT 16337 >seq4480 Length=409792 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || ||||| |||||| | || |||||||| ||||| ||||| Sbjct 402674 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCC 402733 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||||| || |||||||| || || || || || || Sbjct 402734 GATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 402793 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||||||| | || || | || |||| || |||||| Sbjct 402794 CAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAAC 402853 Query 27168 ATTCAAAAGG 27177 || || |||| Sbjct 402854 ATCCAGAAGG 402863 >seq2212 Length=252600 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || ||||| |||||| | || |||||||| ||||| ||||| Sbjct 250478 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCC 250419 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||||| || |||||||| || || || || || || Sbjct 250418 GATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 250359 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||||||| | || || | || |||| || |||||| Sbjct 250358 CAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAAC 250299 Query 27168 ATTCAAAAGG 27177 || || |||| Sbjct 250298 ATCCAGAAGG 250289 >seq4494 Length=58430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 49818 ATACGCACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGC 49877 ||||| || || ||| |||| ||| | || | || || ||||| ||| |||||| || Sbjct 19752 ATACGAGCCAGGAAAACGACACTGGCTAAAGGTAAAGAAGGACTATTTGCTCGATGGTGC 19693 Query 49878 CATGGCCGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGG 49937 ||||||||||| | |||||||| ||| | || ||||||||||| | || ||||| || Sbjct 19692 GATGGCCGATAGTGCAGATTTGGTTGTTCTCGGCGCATGGTACGGCACCGGGAAAAAAGG 19633 Query 49938 T 49938 | Sbjct 19632 T 19632 >seq713 Length=327371 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || |||||| | || || ||| | || || | || |||||| | || Sbjct 310937 CATGCAGATATTCGTCAAAACTTTAACTGGGAAGACAATCACATTGGAGGTGGAAGCCTC 310996 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 |||| ||||||| | || ||| |||||| ||||| |||||||| Sbjct 310997 CGACACGATTGAAAATGTGAAAGCAAAAATACAAGATAAAGAAGG 311041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434893810800960