Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3112 89.7 5e-13 >seq3112 Length=543522 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAG-TCGCCCTCCTC 6957 || || || ||||| ||||||||||| || ||||||| | |||||||| ||||| || || Sbjct 484764 TATTCAGCACCAAAATGTCTCCACTGAAAGCCGTAGA-CTGGCCCAAGATCGCCTTCTTC 484822 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | | || || | |||| | || |||||| | || |||| ||| || || Sbjct 484823 TCTATCAGTAAAACCGCAGCTGTCTAAGAATGATCGAGAACTGTTGGCGTTCCAAATTTT 484882 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 || || | |||||| || ||| || ||| | || || | |||||| || || || Sbjct 484883 TACACCTCTACTCGAGAGATCTCTGGCGTCCGTTGATCCTCTAATGAACCATAGAAGTTC 484942 Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 ||||| ||||| |||| | |||| ||| || |||| || ||||| Sbjct 484943 TTCGACAACGCCACGCCAGAAGACACATTTTGTAGTCAAGAGTGGAAA 484990 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| || |||| || ||| |||| | |||| ||||| ||||| || || || ||| Sbjct 484990 TTTCCACTCTTGACTACAAAATGTGTCTTCTGGCGTGGCGTTGTCGAAGAACTTCTATGG 484931 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || | ||| || ||| || |||||| | || || || || ||| || Sbjct 484930 TTCATTAGAGGATCAACGGACGCCAGAGATCTCTCGAGTAGAGGTGTAAAAATTTGGAAC 484871 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGA- 34398 || || | |||||| || | |||| | || || | | | || || ||||| Sbjct 484870 GCCAACAGTTCTCGATCATTCTTAGACAGCTGCGGTTTTACTGATAGAGAAGAAGGCGAT 484811 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||||||| | ||||||| || ||||||||||| ||||| || || || Sbjct 484810 CTTGGGCCAG-TCTACGGCTTTCAGTGGAGACATTTTGGTGCTGAATA 484764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237056364560