Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq3112 89.7 5e-13
>seq3112
Length=543522
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAG-TCGCCCTCCTC 6957
|| || || ||||| ||||||||||| || ||||||| | |||||||| ||||| || ||
Sbjct 484764 TATTCAGCACCAAAATGTCTCCACTGAAAGCCGTAGA-CTGGCCCAAGATCGCCTTCTTC 484822
Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| | | || || | |||| | || |||||| | || |||| ||| || ||
Sbjct 484823 TCTATCAGTAAAACCGCAGCTGTCTAAGAATGATCGAGAACTGTTGGCGTTCCAAATTTT 484882
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077
|| || | |||||| || ||| || ||| | || || | |||||| || || ||
Sbjct 484883 TACACCTCTACTCGAGAGATCTCTGGCGTCCGTTGATCCTCTAATGAACCATAGAAGTTC 484942
Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125
||||| ||||| |||| | |||| ||| || |||| || |||||
Sbjct 484943 TTCGACAACGCCACGCCAGAAGACACATTTTGTAGTCAAGAGTGGAAA 484990
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279
||||| || |||| || ||| |||| | |||| ||||| ||||| || || || |||
Sbjct 484990 TTTCCACTCTTGACTACAAAATGTGTCTTCTGGCGTGGCGTTGTCGAAGAACTTCTATGG 484931
Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339
||| | || || | ||| || ||| || |||||| | || || || || ||| ||
Sbjct 484930 TTCATTAGAGGATCAACGGACGCCAGAGATCTCTCGAGTAGAGGTGTAAAAATTTGGAAC 484871
Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGA- 34398
|| || | |||||| || | |||| | || || | | | || || |||||
Sbjct 484870 GCCAACAGTTCTCGATCATTCTTAGACAGCTGCGGTTTTACTGATAGAGAAGAAGGCGAT 484811
Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|||||||| | ||||||| || ||||||||||| ||||| || || ||
Sbjct 484810 CTTGGGCCAG-TCTACGGCTTTCAGTGGAGACATTTTGGTGCTGAATA 484764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448237056364560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |