Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3846 93.3 4e-14 seq4480 87.8 2e-12 seq2212 87.8 2e-12 >seq3846 Length=171336 Score = 93.3 bits (102), Expect = 4e-14 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || ||||| | || | || ||||||| ||| ||||| Sbjct 16095 TAACGAAAATTTG--CATTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTT 16152 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| || || | | || ||| |||| |||||||| ||||| || || || | Sbjct 16153 TTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAA 16212 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCA 39217 ||||||||| || | || | | ||||||||| ||| | | || || | | | | Sbjct 16213 ACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCT-TGAATCTTTGCCTTTACATTTTCAA 16271 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 || ||| | ||| || |||| |||||| |||| || || || || || ||||||| Sbjct 16272 TAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGA 16331 Query 39278 TTTGCAT 39284 ||||||| Sbjct 16332 TTTGCAT 16338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||||| || ||||| || || | | || ||| |||| ||| Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCA 15961 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || | |||||||||||| | || | | ||| ||||| Sbjct 15962 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGA 16021 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 |||||| || | | | | || ||| | ||| || |||| |||||| |||| Sbjct 16022 ATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTG 16081 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| || |||||||| Sbjct 16082 CCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 >seq4480 Length=409792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | ||| || || | || || || |||||||| ||||| || Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | | |||||||||| |||||| |||| | | Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742 Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 | |||||| || |||||| || | ||||| | || |||||||| || || || ||| Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682 Query 39277 ATTTGCAT 39284 || ||||| Sbjct 402681 ATCTGCAT 402674 >seq2212 Length=252600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | ||| || || | || || || |||||||| ||||| || Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | | |||||||||| |||||| |||| | | Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410 Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 | |||||| || |||||| || | ||||| | || |||||||| || || || ||| Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470 Query 39277 ATTTGCAT 39284 || ||||| Sbjct 250471 ATCTGCAT 250478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429521921701499