Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 93.3 4e-14
seq4480 87.8 2e-12
seq2212 87.8 2e-12
>seq3846
Length=171336
Score = 93.3 bits (102), Expect = 4e-14
Identities = 171/247 (69%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098
|||| ||||||| || || ||||| | || | || ||||||| ||| |||||
Sbjct 16095 TAACGAAAATTTG--CATTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTT 16152
Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158
||| ||||| || || | | || ||| |||| |||||||| ||||| || || || |
Sbjct 16153 TTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAA 16212
Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCA 39217
||||||||| || | || | | ||||||||| ||| | | || || | | | |
Sbjct 16213 ACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCT-TGAATCTTTGCCTTTACATTTTCAA 16271
Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277
|| ||| | ||| || |||| |||||| |||| || || || || || |||||||
Sbjct 16272 TAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGA 16331
Query 39278 TTTGCAT 39284
|||||||
Sbjct 16332 TTTGCAT 16338
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||||| || ||||| || || | | || ||| |||| |||
Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCA 15961
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || | |||||||||||| | || | | ||| |||||
Sbjct 15962 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGA 16021
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|||||| || | | | | || ||| | ||| || |||| |||||| ||||
Sbjct 16022 ATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTG 16081
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || ||||| || ||||||||
Sbjct 16082 CCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
>seq4480
Length=409792
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
|| || || || || || | ||| || || | || || || |||||||| ||||| ||
Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
|| ||||||||||| | || | | |||||||||| |||||| |||| | |
Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742
Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276
| |||||| || |||||| || | ||||| | || |||||||| || || || |||
Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682
Query 39277 ATTTGCAT 39284
|| |||||
Sbjct 402681 ATCTGCAT 402674
>seq2212
Length=252600
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
|| || || || || || | ||| || || | || || || |||||||| ||||| ||
Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
|| ||||||||||| | || | | |||||||||| |||||| |||| | |
Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410
Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276
| |||||| || |||||| || | ||||| | || |||||||| || || || |||
Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470
Query 39277 ATTTGCAT 39284
|| |||||
Sbjct 250471 ATCTGCAT 250478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429521921701499
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |