Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 150 1e-31
seq4480 89.7 3e-13
seq2212 89.7 3e-13
>seq3846
Length=171336
Score = 150 bits (166), Expect = 1e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || ||||| || || ||||| ||||| | ||||| || || |
Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||||| |||| ||| ||| |||||||| || | || ||||||||
Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || |||||||| || || ||||||| ||| ||||| || |||||
Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|| |||||||| ||||| |||||||||||| | | || |||| |||
Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGGA 16111
Score = 132 bits (146), Expect = 3e-26
Identities = 156/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||||||||| || ||||| || ||||| ||||| | |||||||| || |
Sbjct 16111 AATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTC 16052
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| |||| |||||| ||||| || || | || ||||| ||
Sbjct 16051 CGACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCA 15992
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || ||||| ||||| || || ||||||| ||| || ||| || |||||
Sbjct 15991 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAA 15932
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || ||||| || || | || || |||
Sbjct 15931 TATCCAGAAAGAATCTACTCTTCACTTGGTT 15901
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || || || || || ||||| || || | ||||| || || |
Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | ||||| |||||| ||||||||||| | || ||||| |||
Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || ||||| || || || || ||||| | ||| || || || ||||||
Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAAC 15475
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| || || || |||||| | ||||||||| |||| |||||
Sbjct 15474 ATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGG 15428
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| || || ||| | ||||| || || ||||| ||||||||||| |
Sbjct 17025 AACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGCA 16966
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || | |||| | || || ||| |||||||| || | || |||||
Sbjct 16965 TCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGAC 16906
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | || || ||||| || ||||| || ||||| | ||||| | ||||||
Sbjct 16905 CAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTAT 16846
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| ||||| || ||||| | ||| ||||
Sbjct 16845 AACATCCAAAAGGAATCCACCCTCCATCTAGT 16814
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||| | || || ||||| ||||| | || ||||| | |
Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || ||||| ||||||||||| | || ||||| ||
Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | |||||||| || || ||||| |||||||| | || || | || ||||||
Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATC 23840
|| || || ||||| || | ||| | ||| | || | || || |||||
Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGGCTCCGTGGTGGATC 14969
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || ||||| || || || ||||| || | ||
Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || |||||| ||||| || || | || ||||| ||
Sbjct 16506 GACACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 16447
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || |||||||||||||| || || || | || || | |||||||||
Sbjct 16446 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAAC 16387
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || ||||| || ||
Sbjct 16386 ATCCAGAAAGAATCAAC 16370
>seq4480
Length=409792
Score = 89.7 bits (98), Expect = 3e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| || ||||| ||||| || || |||||||| || || || | |
Sbjct 402673 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 402732
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | |||| | || ||||| |||||||| || | || ||||| ||
Sbjct 402733 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 402792
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||||||||||||||| || || | || ||| | || |||||
Sbjct 402793 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 402852
Query 23790 CATACAAAA 23798
||| || ||
Sbjct 402853 CATCCAGAA 402861
>seq2212
Length=252600
Score = 89.7 bits (98), Expect = 3e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| || ||||| ||||| || || |||||||| || || || | |
Sbjct 250479 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 250420
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | |||| | || ||||| |||||||| || | || ||||| ||
Sbjct 250419 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 250360
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||||||||||||||| || || | || ||| | || |||||
Sbjct 250359 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 250300
Query 23790 CATACAAAA 23798
||| || ||
Sbjct 250299 CATCCAGAA 250291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337990967537684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |