Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 145 2e-29
seq2229 109 1e-18
seq1693 109 1e-18
seq4480 107 5e-18
seq2212 107 5e-18
seq1908 91.5 4e-13
seq1871 89.7 1e-12
seq713 84.2 5e-11
>seq3846
Length=171336
Score = 145 bits (160), Expect = 2e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||| || || | ||| ||||| |||||||| |||| |||||| || | || ||
Sbjct 15889 ACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGT 15948
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| |||||||| ||||| ||||| | || || ||||| || ||||| ||
Sbjct 15949 CCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 16008
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| || || ||| ||| ||| || ||||| |||| || || || ||
Sbjct 16009 CTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAA 16068
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|||||| || ||||| || | ||| || | ||| | |||||||
Sbjct 16069 CGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111
Score = 134 bits (148), Expect = 3e-26
Identities = 150/198 (76%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||| ||||| | ||||| || | ||| |||| |||||||| |||||||| |||
Sbjct 15458 GTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCTTCAAGCTGCTTTCCA 15517
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
|| ||||| ||||| |||||||| || ||||| ||||| ||||||||||| |||||| ||
Sbjct 15518 GCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGAT-TTTTGCTTT 15576
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
|| || || ||||| |||| || || || || || || || ||||| || | |||
Sbjct 15577 TACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGT 15636
Query 225696 TTTTATGAACACTTGCAT 225713
|| | || | ||||||
Sbjct 15637 CTTCACAAAAATTTGCAT 15654
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| || |||||||||||||||| ||||| || | | ||| | ||||||
Sbjct 15671 AGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCT 15730
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || || || ||||| ||||| | || || ||||| || ||||| || || |||||
Sbjct 15731 TCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCC 15790
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || ||||||| || || ||||| || | || || || || ||||| |||
Sbjct 15791 TGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTC 15850
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || ||||| | || | ||||||
Sbjct 15851 TTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|||||||||||||| | |||||| || | |||||| | || ||||| |||||||| ||
Sbjct 16142 GTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCG 16201
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
||||| || | || || || || || ||||| || || |||||||| |||||| |||
Sbjct 16202 GCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTT 16261
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||| || ||||| |||| || || || |||||||| || ||||| || | ||
Sbjct 16262 ACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTC 16321
Query 225697 TTTATGAACACTTGCAT 225713
|| | || | ||||||
Sbjct 16322 TTGACAAAGATTTGCAT 16338
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || || ||||| || || || || | ||||| || | | || | |||||||
Sbjct 14987 AGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCT 15046
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| ||||| ||||| || | | || ||||| || ||||| ||||| ||||||
Sbjct 15047 TCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCT 15106
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| || ||| ||| ||| || ||||| || | || || || || ||||| ||
Sbjct 15107 TGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTT 15166
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| ||||| |||||
Sbjct 15167 TTGCCGGTCAAGGTTTT 15183
Score = 111 bits (122), Expect = 4e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||| || || || || || ||||| || ||||| | ||| || |||| | |||
Sbjct 15205 ACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGT 15264
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||||||| ||||| || ||||| || || | || || ||||| || || || ||
Sbjct 15265 ACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCC 15324
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||||||||||| || |||||| ||||| || || || || || | || || || |
Sbjct 15325 CTCCTTGTCTTGAAT-TTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCA 15383
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| || || ||||| || || | |||||| | || | ||||||
Sbjct 15384 AAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 104 bits (114), Expect = 6e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || ||||| |||||||| |||| |||||||| | | || | |||||
Sbjct 16355 AGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCC 16414
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || ||||| | | || ||||| || || || || |||||||||
Sbjct 16415 TCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 16474
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || |||||| ||| || ||||| || | || || || | || || ||
Sbjct 16475 TGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTT 16534
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || | ||| | |||||
Sbjct 16535 TTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
>seq2229
Length=3813
Score = 109 bits (120), Expect = 1e-18
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595
||| | |||| || ||| |||| ||| | || | || | ||||| || | || ||
Sbjct 962 ATTTATTGGTGATGATCAAATTTATAACATAATCGTAACATCTCATGCATTCTTAATAAT 1021
Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655
||| ||| | ||||| || |||| || || || || ||||||||||| ||||||||||
Sbjct 1022 TTTTTTTATAGTTATACCCATTATAATTGGAGGATTTGGAAATTGATTAATTCCTTTAAT 1081
Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715
| || || |||||||| ||||| || | | || |||||||| ||||||||||| ||
Sbjct 1082 ACTAGGAGCCCCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGATTACTTCC 1141
Query 7716 GCCTTCCTTA 7725
|| || |||
Sbjct 1142 ACCATCATTA 1151
>seq1693
Length=11795
Score = 109 bits (120), Expect = 1e-18
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595
||| | |||| || ||| |||| ||| | ||| | || | ||||| || | || ||
Sbjct 3488 ATTTATTGGTGATGATCAAATTTATAACATAATTGTAACATCTCATGCATTCTTAATAAT 3547
Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655
||| ||| | ||||| || |||| || || || || ||||||||||| ||||||||||
Sbjct 3548 TTTTTTTATAGTTATACCCATTATAATTGGAGGATTTGGAAATTGATTAATTCCTTTAAT 3607
Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715
| || || |||||||| ||||| || | | || |||||||| |||||| || ||||
Sbjct 3608 ACTAGGAGCCCCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGACTATTACC 3667
Query 7716 GCCTTCCTTA 7725
|| || |||
Sbjct 3668 ACCATCATTA 3677
Score = 86.0 bits (94), Expect = 1e-11
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595
||| | |||| || ||| |||| ||| | ||| | || | ||||| || | || ||
Sbjct 740 ATTTATTGGTGATGATCAAATTTATAACATAATTGTAACATCTCATGCATTCTTAATAAT 799
Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655
||| | | | ||||| || |||| || || || || | ||||||| | ||||| ||||
Sbjct 800 TTTTTCTATAGTTATACCTATTATAATTGGAGGATTTGAAAATTGACTAATTCCTCTAAT 859
Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715
| ||||| || ||| | ||||||| | | || ||||||| ||||||||||| ||
Sbjct 860 ACTAGGTGCCCCAGATGTAGCTTTTCTCCGAATAAATAATATAACATTTTGATTACTTCC 919
Query 7716 GCCTTCCTTA 7725
|| || |||
Sbjct 920 ACCATCATTA 929
>seq4480
Length=409792
Score = 107 bits (118), Expect = 5e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| || | | ||| | ||||| || || || || || || |||||
Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
||||| || ||||| || || || || || ||||| ||||| || ||| ||| ||||
Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
||||| || || | ||||| || | ||||| ||||||||||||| || |||| |||
Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682
Query 225706 ACTTGCATT 225714
| ||||||
Sbjct 402681 ATCTGCATT 402673
>seq2212
Length=252600
Score = 107 bits (118), Expect = 5e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| || | | ||| | ||||| || || || || || || |||||
Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
||||| || ||||| || || || || || ||||| ||||| || ||| ||| ||||
Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
||||| || || | ||||| || | ||||| ||||||||||||| || |||| |||
Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470
Query 225706 ACTTGCATT 225714
| ||||||
Sbjct 250471 ATCTGCATT 250479
>seq1908
Length=8065
Score = 91.5 bits (100), Expect = 4e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638
||||| || | |||||||| ||| | ||||| || |||| || || || || ||||||
Sbjct 1927 CATGCATTCTTAATGATTTTTTTTATAGTTATACCTATTATAATCGGAGGATTTGGAAAT 1986
Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698
||| | || || |||| | || || || ||||| |||||| | | | || ||||||
Sbjct 1987 TGACTAATTTCTCTAATACTAGGAGCCCCAGATATAGCTTTTTCCCGAATAAATAATATA 2046
Query 7699 AGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731
|| ||||||||||| || || || ||| || ||
Sbjct 2047 AGATTTTGATTACTTCCACCATCATTAATTTTA 2079
>seq1871
Length=5157
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 370682 CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAA 370741
||||||||||||||||||||||| || | ||| || || ||||||||||| |||||||
Sbjct 1947 CCAAAAAATCAGAATAAATGTTGGTATAAGATTGGGTCTCCTCCGCCTGAAAAATCAAAA 2006
Query 370742 AAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|| | ||||| | ||||| ||| |||||
Sbjct 2007 AAAGTTGTATTTATATTTCAATCTGTTAA 2035
>seq713
Length=327371
Score = 84.2 bits (92), Expect = 5e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || || |||||||| |||| ||||||||||| | |||
Sbjct 311360 ACGAAGGCGGAGTACCAAGTGAAGCGTAGATTCTTTCTGGATATTGTAATCGGAAAGAGT 311301
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
||| ||||| || || ||||| ||||| || || | || || || || || ||||| ||
Sbjct 311300 TCTTCCATCCTCAAGTTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATCCC 311241
Query 225612 T 225612
|
Sbjct 311240 T 311240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192462091698962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |