Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3846 145 2e-29 seq2229 109 1e-18 seq1693 109 1e-18 seq4480 107 5e-18 seq2212 107 5e-18 seq1908 91.5 4e-13 seq1871 89.7 1e-12 seq713 84.2 5e-11 >seq3846 Length=171336 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | ||| ||||| |||||||| |||| |||||| || | || || Sbjct 15889 ACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGT 15948 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 15949 CCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 16008 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| || || ||| ||| ||| || ||||| |||| || || || || Sbjct 16009 CTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAA 16068 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| || ||||| || | ||| || | ||| | ||||||| Sbjct 16069 CGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | ||||| || | ||| |||| |||||||| |||||||| ||| Sbjct 15458 GTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCTTCAAGCTGCTTTCCA 15517 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| ||||| |||||||| || ||||| ||||| ||||||||||| |||||| || Sbjct 15518 GCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGAT-TTTTGCTTT 15576 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || || || ||||| |||| || || || || || || || ||||| || | ||| Sbjct 15577 TACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGT 15636 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 15637 CTTCACAAAAATTTGCAT 15654 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || |||||||||||||||| ||||| || | | ||| | |||||| Sbjct 15671 AGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCT 15730 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| | || || ||||| || ||||| || || ||||| Sbjct 15731 TCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCC 15790 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||||| || || ||||| || | || || || || ||||| ||| Sbjct 15791 TGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTC 15850 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | || | |||||| Sbjct 15851 TTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||| | |||||| || | |||||| | || ||||| |||||||| || Sbjct 16142 GTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCG 16201 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | || || || || || ||||| || || |||||||| |||||| ||| Sbjct 16202 GCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTT 16261 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || ||||| |||| || || || |||||||| || ||||| || | || Sbjct 16262 ACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTC 16321 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 16322 TTGACAAAGATTTGCAT 16338 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || ||||| || || || || | ||||| || | | || | ||||||| Sbjct 14987 AGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCT 15046 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| ||||| || | | || ||||| || ||||| ||||| |||||| Sbjct 15047 TCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCT 15106 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| ||| ||| || ||||| || | || || || || ||||| || Sbjct 15107 TGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTT 15166 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| ||||| ||||| Sbjct 15167 TTGCCGGTCAAGGTTTT 15183 Score = 111 bits (122), Expect = 4e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || ||||| || ||||| | ||| || |||| | ||| Sbjct 15205 ACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGT 15264 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| ||||| || ||||| || || | || || ||||| || || || || Sbjct 15265 ACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCC 15324 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||| || |||||| ||||| || || || || || | || || || | Sbjct 15325 CTCCTTGTCTTGAAT-TTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCA 15383 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || ||||| || || | |||||| | || | |||||| Sbjct 15384 AAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || ||||| |||||||| |||| |||||||| | | || | ||||| Sbjct 16355 AGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCC 16414 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| | | || ||||| || || || || ||||||||| Sbjct 16415 TCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 16474 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || |||||| ||| || ||||| || | || || || | || || || Sbjct 16475 TGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTT 16534 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | ||| | ||||| Sbjct 16535 TTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566 >seq2229 Length=3813 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || ||| |||| ||| | || | || | ||||| || | || || Sbjct 962 ATTTATTGGTGATGATCAAATTTATAACATAATCGTAACATCTCATGCATTCTTAATAAT 1021 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | ||||| || |||| || || || || ||||||||||| |||||||||| Sbjct 1022 TTTTTTTATAGTTATACCCATTATAATTGGAGGATTTGGAAATTGATTAATTCCTTTAAT 1081 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | || || |||||||| ||||| || | | || |||||||| ||||||||||| || Sbjct 1082 ACTAGGAGCCCCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGATTACTTCC 1141 Query 7716 GCCTTCCTTA 7725 || || ||| Sbjct 1142 ACCATCATTA 1151 >seq1693 Length=11795 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || ||| |||| ||| | ||| | || | ||||| || | || || Sbjct 3488 ATTTATTGGTGATGATCAAATTTATAACATAATTGTAACATCTCATGCATTCTTAATAAT 3547 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | ||||| || |||| || || || || ||||||||||| |||||||||| Sbjct 3548 TTTTTTTATAGTTATACCCATTATAATTGGAGGATTTGGAAATTGATTAATTCCTTTAAT 3607 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | || || |||||||| ||||| || | | || |||||||| |||||| || |||| Sbjct 3608 ACTAGGAGCCCCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGACTATTACC 3667 Query 7716 GCCTTCCTTA 7725 || || ||| Sbjct 3668 ACCATCATTA 3677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || ||| |||| ||| | ||| | || | ||||| || | || || Sbjct 740 ATTTATTGGTGATGATCAAATTTATAACATAATTGTAACATCTCATGCATTCTTAATAAT 799 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| | | | ||||| || |||| || || || || | ||||||| | ||||| |||| Sbjct 800 TTTTTCTATAGTTATACCTATTATAATTGGAGGATTTGAAAATTGACTAATTCCTCTAAT 859 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | ||||| || ||| | ||||||| | | || ||||||| ||||||||||| || Sbjct 860 ACTAGGTGCCCCAGATGTAGCTTTTCTCCGAATAAATAATATAACATTTTGATTACTTCC 919 Query 7716 GCCTTCCTTA 7725 || || ||| Sbjct 920 ACCATCATTA 929 >seq4480 Length=409792 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | | ||| | ||||| || || || || || || ||||| Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| || ||||| || || || || || ||||| ||||| || ||| ||| |||| Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 ||||| || || | ||||| || | ||||| ||||||||||||| || |||| ||| Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682 Query 225706 ACTTGCATT 225714 | |||||| Sbjct 402681 ATCTGCATT 402673 >seq2212 Length=252600 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | | ||| | ||||| || || || || || || ||||| Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| || ||||| || || || || || ||||| ||||| || ||| ||| |||| Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 ||||| || || | ||||| || | ||||| ||||||||||||| || |||| ||| Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470 Query 225706 ACTTGCATT 225714 | |||||| Sbjct 250471 ATCTGCATT 250479 >seq1908 Length=8065 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| || | |||||||| ||| | ||||| || |||| || || || || |||||| Sbjct 1927 CATGCATTCTTAATGATTTTTTTTATAGTTATACCTATTATAATCGGAGGATTTGGAAAT 1986 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 ||| | || || |||| | || || || ||||| |||||| | | | || |||||| Sbjct 1987 TGACTAATTTCTCTAATACTAGGAGCCCCAGATATAGCTTTTTCCCGAATAAATAATATA 2046 Query 7699 AGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || ||||||||||| || || || ||| || || Sbjct 2047 AGATTTTGATTACTTCCACCATCATTAATTTTA 2079 >seq1871 Length=5157 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 370682 CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAA 370741 ||||||||||||||||||||||| || | ||| || || ||||||||||| ||||||| Sbjct 1947 CCAAAAAATCAGAATAAATGTTGGTATAAGATTGGGTCTCCTCCGCCTGAAAAATCAAAA 2006 Query 370742 AAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || | ||||| | ||||| ||| ||||| Sbjct 2007 AAAGTTGTATTTATATTTCAATCTGTTAA 2035 >seq713 Length=327371 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || |||||||| |||| ||||||||||| | ||| Sbjct 311360 ACGAAGGCGGAGTACCAAGTGAAGCGTAGATTCTTTCTGGATATTGTAATCGGAAAGAGT 311301 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || || ||||| ||||| || || | || || || || || ||||| || Sbjct 311300 TCTTCCATCCTCAAGTTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATCCC 311241 Query 225612 T 225612 | Sbjct 311240 T 311240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192462091698962