Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 167 3e-36
seq3919 98.7 1e-15
>seq4498
Length=49303
Score = 167 bits (184), Expect = 3e-36
Identities = 275/391 (70%), Gaps = 7/391 (2%)
Strand=Plus/Plus
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
||||||| |||||||||||| |||| || ||| |||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
| || |||||||| || || || | || | ||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 77644 AATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAA 77700
|||| || | || ||||||||||||| | ||| || ||||||||||||||||
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 77701 CTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGA 77760
| || || || | || | | | ||||| ||| || || || || |||||||| |||||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 77761 TAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAAAC 77819
| ||||||| || ||||| || || |||||| ||| || || || || || |
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGA-TCTTTGTACAGCATGTAT 42083
Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA-T 77878
|| || || ||||||| ||| || | || |||| | ||| | | | ||| || |
Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCTAACCACAGATCCCGGGCTGCTACT 42143
Query 77879 CATAGATTTGTATCGCCTCTCTCTTTCATAT 77909
| | ||||||||| | | || ||||||||
Sbjct 42144 TGTCG-TTTGTATCGGCCCGCTTTTTCATAT 42173
Score = 131 bits (144), Expect = 2e-25
Identities = 217/313 (69%), Gaps = 8/313 (3%)
Strand=Plus/Plus
Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131
|| ||| | ||||| | ||| | |||||| | || ||| | ||||||||||||| ||
Sbjct 42508 CCAGTACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAA 42567
Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191
| ||| | | || || | ||||| ||||| || || | || || || || ||||||
Sbjct 42568 ACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTA 42627
Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251
|| || | |||||| |||| || ||| ||||| |||||| ||||| | || ||| |
Sbjct 42628 TATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTA 42687
Query 78252 CCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATAT 78307
|| | || | ||| |||| |||| || | ||||| || |||| |||
Sbjct 42688 CCTTTGGCTCTGATA----CAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTAT 42743
Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367
|| ||||| ||||||| ||||| || || || || ||||| || ||| |||| | |
Sbjct 42744 CAGTGCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTTCATTGTCAA 42803
Query 78368 AAGAAAACAGCTA 78380
|||||||||||||
Sbjct 42804 AAGAAAACAGCTA 42816
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT 78476
|| ||||| ||||| ||||| ||||||| || | ||||||||| |||||||| |||
Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004
Query 78477 TCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536
|| || || | |||||| || || || ||||||||||||| ||| || ||||| ||
Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064
Query 78537 ACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596
| || ||| ||||||| ||| || | |||| | ||||| || ||||| ||
Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124
Query 78597 TTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634
|| || ||| ||||| || |||||||| |||| ||
Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTT 43162
Score = 116 bits (128), Expect = 5e-21
Identities = 211/309 (68%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089
||||| |||||| || | ||||| ||||| |||| |||| ||| | | |
Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170
Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149
| || | | || | || | ||| ||||| |||||||||||||||||||| || ||||
Sbjct 41171 AGCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCG 41230
Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209
|| || |||| || |||||||| | ||| | ||||||||||| || | |||||| ||
Sbjct 41231 GCGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGC 41290
Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269
|| || ||||| ||||| || || | | || ||| | | || ||| | ||
Sbjct 41291 TGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTAT 41350
Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329
||| |||| ||| | ||| ||||||||||||| ||| |||| ||| | || ||
Sbjct 41351 CTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATA 41410
Query 77330 TTGTAGAAT 77338
|| | |||
Sbjct 41411 CTGCAAAAT 41419
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414
|| || | ||| ||| ||||||||||||| |||| || | ||| || || |||||||||
Sbjct 41528 GAACCTTCATAAGTTGGATAAGGTCCTTCTTTTTCTGCAATTTCGCAGCTGGCTTCCAAT 41587
Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474
||||| || || | |||||| || || | || || | || |||||| ||| ||
Sbjct 41588 GCTCCATAGTACAATGTTTCAAAGATTCCAATGTTAAGTTTCTGGGCTTCATCACTTTCG 41647
Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527
|| ||||| | | | | || |||||||||| |||||||| ||||| ||
Sbjct 41648 AAAGGATATCGCATTAATAGGAAAGCATCTGCTAGTCCCTGAATACCAATGCC 41700
>seq3919
Length=163912
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684
|||| |||| |||||||||||| ||||||||||||| || ||||| ||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 48744
|||| || || |||| || ||||| || || ||||| | ||||| | | ||| |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 48745 TAGGTTCCA 48753
|||||||
Sbjct 143684 GTGGTTCCA 143692
Score = 89.7 bits (98), Expect = 7e-13
Identities = 142/201 (71%), Gaps = 7/201 (3%)
Strand=Plus/Plus
Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251
|| || ||||| ||||| | |||||| ||||||||||| ||||| | |||||| ||||
Sbjct 142242 AAGGTCAGACCTGGCATCAATCCACGCTTTTTGAGCCAGAATATGGAGGCGAAACTTCCA 142301
Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---T 48308
||||| || ||||| || || ||||| || | || ||| ||| | | ||
Sbjct 142302 CTGAAGAAGATCCCTTCGACTGCTGCAAAGGCAACGACTCGCTCACCGAAGTTTGCACTG 142361
Query 48309 TCGTTGTGTATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366
||||||| |||||| ||| | ||||| | |||||||| ||||| || | |||
Sbjct 142362 TCGTTGTTTATCCA--GTTCAGCGCCCAGTTTGCCTTCTTAGCGACACAGGGAAGGTTTT 142419
Query 48367 CTATAGCATTAAAGAGAAAGT 48387
| || ||||| || || ||||
Sbjct 142420 CAATGGCATTGAACAGGAAGT 142440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694629525162720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |