Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4498 167 3e-36 seq3919 98.7 1e-15 >seq4498 Length=49303 Score = 167 bits (184), Expect = 3e-36 Identities = 275/391 (70%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||| |||||||||||| |||| || ||| |||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 | || |||||||| || || || | || | ||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 77644 AATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAA 77700 |||| || | || ||||||||||||| | ||| || |||||||||||||||| Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964 Query 77701 CTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGA 77760 | || || || | || | | | ||||| ||| || || || || |||||||| ||||||| Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024 Query 77761 TAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAAAC 77819 | ||||||| || ||||| || || |||||| ||| || || || || || | Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGA-TCTTTGTACAGCATGTAT 42083 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA-T 77878 || || || ||||||| ||| || | || |||| | ||| | | | ||| || | Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCTAACCACAGATCCCGGGCTGCTACT 42143 Query 77879 CATAGATTTGTATCGCCTCTCTCTTTCATAT 77909 | | ||||||||| | | || |||||||| Sbjct 42144 TGTCG-TTTGTATCGGCCCGCTTTTTCATAT 42173 Score = 131 bits (144), Expect = 2e-25 Identities = 217/313 (69%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 || ||| | ||||| | ||| | |||||| | || ||| | ||||||||||||| || Sbjct 42508 CCAGTACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAA 42567 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 | ||| | | || || | ||||| ||||| || || | || || || || |||||| Sbjct 42568 ACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTA 42627 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251 || || | |||||| |||| || ||| ||||| |||||| ||||| | || ||| | Sbjct 42628 TATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTA 42687 Query 78252 CCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATAT 78307 || | || | ||| |||| |||| || | ||||| || |||| ||| Sbjct 42688 CCTTTGGCTCTGATA----CAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTAT 42743 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367 || ||||| ||||||| ||||| || || || || ||||| || ||| |||| | | Sbjct 42744 CAGTGCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTTCATTGTCAA 42803 Query 78368 AAGAAAACAGCTA 78380 ||||||||||||| Sbjct 42804 AAGAAAACAGCTA 42816 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT 78476 || ||||| ||||| ||||| ||||||| || | ||||||||| |||||||| ||| Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004 Query 78477 TCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 || || || | |||||| || || || ||||||||||||| ||| || ||||| || Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064 Query 78537 ACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 | || ||| ||||||| ||| || | |||| | ||||| || ||||| || Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124 Query 78597 TTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 || || ||| ||||| || |||||||| |||| || Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTT 43162 Score = 116 bits (128), Expect = 5e-21 Identities = 211/309 (68%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089 ||||| |||||| || | ||||| ||||| |||| |||| ||| | | | Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170 Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149 | || | | || | || | ||| ||||| |||||||||||||||||||| || |||| Sbjct 41171 AGCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCG 41230 Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209 || || |||| || |||||||| | ||| | ||||||||||| || | |||||| || Sbjct 41231 GCGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGC 41290 Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269 || || ||||| ||||| || || | | || ||| | | || ||| | || Sbjct 41291 TGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTAT 41350 Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329 ||| |||| ||| | ||| ||||||||||||| ||| |||| ||| | || || Sbjct 41351 CTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATA 41410 Query 77330 TTGTAGAAT 77338 || | ||| Sbjct 41411 CTGCAAAAT 41419 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 || || | ||| ||| ||||||||||||| |||| || | ||| || || ||||||||| Sbjct 41528 GAACCTTCATAAGTTGGATAAGGTCCTTCTTTTTCTGCAATTTCGCAGCTGGCTTCCAAT 41587 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 ||||| || || | |||||| || || | || || | || |||||| ||| || Sbjct 41588 GCTCCATAGTACAATGTTTCAAAGATTCCAATGTTAAGTTTCTGGGCTTCATCACTTTCG 41647 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 || ||||| | | | | || |||||||||| |||||||| ||||| || Sbjct 41648 AAAGGATATCGCATTAATAGGAAAGCATCTGCTAGTCCCTGAATACCAATGCC 41700 >seq3919 Length=163912 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| |||| |||||||||||| ||||||||||||| || ||||| ||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 48744 |||| || || |||| || ||||| || || ||||| | ||||| | | ||| | Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683 Query 48745 TAGGTTCCA 48753 ||||||| Sbjct 143684 GTGGTTCCA 143692 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/201 (71%), Gaps = 7/201 (3%) Strand=Plus/Plus Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || ||||| ||||| | |||||| ||||||||||| ||||| | |||||| |||| Sbjct 142242 AAGGTCAGACCTGGCATCAATCCACGCTTTTTGAGCCAGAATATGGAGGCGAAACTTCCA 142301 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---T 48308 ||||| || ||||| || || ||||| || | || ||| ||| | | || Sbjct 142302 CTGAAGAAGATCCCTTCGACTGCTGCAAAGGCAACGACTCGCTCACCGAAGTTTGCACTG 142361 Query 48309 TCGTTGTGTATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 ||||||| |||||| ||| | ||||| | |||||||| ||||| || | ||| Sbjct 142362 TCGTTGTTTATCCA--GTTCAGCGCCCAGTTTGCCTTCTTAGCGACACAGGGAAGGTTTT 142419 Query 48367 CTATAGCATTAAAGAGAAAGT 48387 | || ||||| || || |||| Sbjct 142420 CAATGGCATTGAACAGGAAGT 142440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694629525162720