Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 152 7e-32
seq3919 98.7 1e-15
>seq4498
Length=49303
Score = 152 bits (168), Expect = 7e-32
Identities = 272/391 (70%), Gaps = 7/391 (2%)
Strand=Plus/Plus
Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178
||||||| |||||||||||| |||| || |||||||||| ||||| || || || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238
|||| |||||||| || || || | | || | ||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 76239 AATCAAAT---TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAA 76295
|||| || ||| | | |||||||| |||| ||| || ||||||||||||||||
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 76296 CGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355
| || || || | || | | ||||| ||| || || ||||| |||||||| || ||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAAC 76414
| || || | || ||||| || || || || ||| || || || || | |
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGA-TCTTTGTACAGCATGTAT 42083
Query 76415 GGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA-T 76473
|| || |||||||||| ||| || | || |||| | ||| | | | ||| || |
Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCTAACCACAGATCCCGGGCTGCTACT 42143
Query 76474 TATAGATTTGTATCGCTTCTCTCTTTCATAT 76504
| | | ||||||||| | || ||||||||
Sbjct 42144 TGTCG-TTTGTATCGGCCCGCTTTTTCATAT 42173
Score = 118 bits (130), Expect = 2e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765
||| ||||| || ||||||||||||||||| || |||| || || |||| || |||||
Sbjct 41192 ATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGT 41251
Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825
||| | ||| | ||||||||||| || | |||||| || || || ||||||||||| ||
Sbjct 41252 ATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGG 41311
Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885
|| | | || ||| | | || ||| | || ||| |||| ||| | |||
Sbjct 41312 GGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCA 41371
Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933
||||||||||||| |||| |||| ||| | || || || | |||
Sbjct 41372 GTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATACTGCAAAAT 41419
Score = 118 bits (130), Expect = 2e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071
|| ||||| ||||| || || ||||||| || | ||||||||| |||||||| ||
Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004
Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131
|| ||||| | |||||| || ||||| ||||||||||||| ||| || |||| |||
Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064
Query 77132 ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 77191
| || ||| ||||||| ||| || | |||| | ||||| || ||||| ||
Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124
Query 77192 TTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCC 77239
|| || ||| ||||| || |||||||| | || || | | |||||
Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTTCAATCTGTCC 43172
Score = 111 bits (122), Expect = 2e-19
Identities = 210/309 (68%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726
|| ||| | ||||| | ||| | ||||| | || ||| | ||||||||||||| ||
Sbjct 42508 CCAGTACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAA 42567
Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786
| || | |||| || | ||||| ||||| || || | || || || || ||||||
Sbjct 42568 ACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTA 42627
Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846
|| || | |||||| |||| || ||| ||||| ||||| ||||| | || ||| |
Sbjct 42628 TATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTA 42687
Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906
|| || | ||| | ||| || || | ||||| || ||| || ||
Sbjct 42688 CCTTTGGCTCTGATACAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGT 42747
Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGA 76966
|| || ||||||| || ||||| || || || |||||||| ||| |||| | | ||||
Sbjct 42748 GCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTTCATTGTCAAAAGA 42807
Query 76967 AAACAGCTA 76975
|||||||||
Sbjct 42808 AAACAGCTA 42816
Score = 87.8 bits (96), Expect = 3e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 76502 TATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCA 76561
|| ||||| || || |||||||||||| ||||||||||| |||| |||||||||||
Sbjct 42258 TACTGTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCG 42317
Query 76562 TTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGT 76621
| |||||||| | ||| | | |||| ||| ||||||||||| | ||||||
Sbjct 42318 TGAGGACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGA 42377
Query 76622 ATCCATAGAGC 76632
||||| || ||
Sbjct 42378 ATCCAAAGGGC 42388
>seq3919
Length=163912
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173
|||| |||| |||||||||||| ||||||| ||||| || ||||| ||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTA 47233
|||| || || | |||| ||||| || || || ||||| | ||||| | | ||| |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 47234 TAGGTTCCA 47242
|||||||
Sbjct 143684 GTGGTTCCA 143692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712894092471360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |