Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4498 152 7e-32 seq3919 98.7 1e-15 >seq4498 Length=49303 Score = 152 bits (168), Expect = 7e-32 Identities = 272/391 (70%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 ||||||| |||||||||||| |||| || |||||||||| ||||| || || || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 |||| |||||||| || || || | | || | ||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 76239 AATCAAAT---TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAA 76295 |||| || ||| | | |||||||| |||| ||| || |||||||||||||||| Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964 Query 76296 CGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355 | || || || | || | | ||||| ||| || || ||||| |||||||| || |||| Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024 Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAAC 76414 | || || | || ||||| || || || || ||| || || || || | | Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGA-TCTTTGTACAGCATGTAT 42083 Query 76415 GGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA-T 76473 || || |||||||||| ||| || | || |||| | ||| | | | ||| || | Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCTAACCACAGATCCCGGGCTGCTACT 42143 Query 76474 TATAGATTTGTATCGCTTCTCTCTTTCATAT 76504 | | | ||||||||| | || |||||||| Sbjct 42144 TGTCG-TTTGTATCGGCCCGCTTTTTCATAT 42173 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||| ||||| || ||||||||||||||||| || |||| || || |||| || ||||| Sbjct 41192 ATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGT 41251 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||| | ||| | ||||||||||| || | |||||| || || || ||||||||||| || Sbjct 41252 ATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGG 41311 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || | | || ||| | | || ||| | || ||| |||| ||| | ||| Sbjct 41312 GGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCA 41371 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||||||||||| |||| |||| ||| | || || || | ||| Sbjct 41372 GTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATACTGCAAAAT 41419 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 || ||||| ||||| || || ||||||| || | ||||||||| |||||||| || Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004 Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131 || ||||| | |||||| || ||||| ||||||||||||| ||| || |||| ||| Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064 Query 77132 ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 77191 | || ||| ||||||| ||| || | |||| | ||||| || ||||| || Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124 Query 77192 TTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCC 77239 || || ||| ||||| || |||||||| | || || | | ||||| Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTTCAATCTGTCC 43172 Score = 111 bits (122), Expect = 2e-19 Identities = 210/309 (68%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || ||| | ||||| | ||| | ||||| | || ||| | ||||||||||||| || Sbjct 42508 CCAGTACTTTTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAA 42567 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 | || | |||| || | ||||| ||||| || || | || || || || |||||| Sbjct 42568 ACTGCAAAGGCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTA 42627 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 || || | |||||| |||| || ||| ||||| ||||| ||||| | || ||| | Sbjct 42628 TATACGCGCAACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTA 42687 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 || || | ||| | ||| || || | ||||| || ||| || || Sbjct 42688 CCTTTGGCTCTGATACAATGTATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGT 42747 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGA 76966 || || ||||||| || ||||| || || || |||||||| ||| |||| | | |||| Sbjct 42748 GCGCATTGTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTTCATTGTCAAAAGA 42807 Query 76967 AAACAGCTA 76975 ||||||||| Sbjct 42808 AAACAGCTA 42816 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76502 TATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCA 76561 || ||||| || || |||||||||||| ||||||||||| |||| ||||||||||| Sbjct 42258 TACTGTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCG 42317 Query 76562 TTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGT 76621 | |||||||| | ||| | | |||| ||| ||||||||||| | |||||| Sbjct 42318 TGAGGACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGA 42377 Query 76622 ATCCATAGAGC 76632 ||||| || || Sbjct 42378 ATCCAAAGGGC 42388 >seq3919 Length=163912 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| |||| |||||||||||| ||||||| ||||| || ||||| ||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTA 47233 |||| || || | |||| ||||| || || || ||||| | ||||| | | ||| | Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683 Query 47234 TAGGTTCCA 47242 ||||||| Sbjct 143684 GTGGTTCCA 143692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712894092471360